Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006466.1 Hibiscus syriacus cultivar Beakdansim tig00015667_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108623

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2195--2313
58
2.1
58
95
3
213
37
5
4
52
1.43
9056--9130
30
2.4
32
89
10
120
32
0
21
46
1.51
11460--11487
2
14.0
2
100
0
56
50
0
0
50
1.00
16952--17074
64
2.0
61
90
4
192
39
17
4
39
1.68
24152--24232
39
2.1
39
92
0
135
50
6
9
33
1.60
30604--30671
34
2.0
34
97
0
127
39
20
27
11
1.88
32516--32573
29
2.0
29
86
0
80
15
34
27
22
1.94
32630--32693
10
6.4
9
79
16
65
26
34
28
10
1.90
32637--32694
20
2.9
20
87
5
82
29
32
25
12
1.92
32671--32751
33
2.5
33
89
0
117
25
27
35
11
1.90
32678--32764
33
2.6
33
87
3
113
26
26
36
10
1.88
32767--32864
50
2.0
49
93
2
169
15
21
38
24
1.92
32902--32958
29
2.0
29
96
0
105
19
29
35
15
1.93
35230--35477
60
4.1
60
82
7
254
40
4
22
32
1.74
35488--35565
40
2.0
40
89
0
120
28
16
32
23
1.96
43472--43506
13
2.8
12
91
8
61
8
22
0
68
1.16
44806--45106
43
7.0
43
82
5
333
34
20
21
23
1.96
44819--45106
85
3.4
84
82
4
319
34
20
21
23
1.97
44819--45104
127
2.2
128
84
7
393
34
20
21
23
1.97
46500--46543
18
2.4
18
88
0
61
22
2
27
47
1.63
47934--48171
30
7.9
30
83
0
244
21
22
18
37
1.94
47934--48168
90
2.6
90
81
4
276
21
22
18
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52570--52599
2
15.0
2
100
0
60
50
0
0
50
1.00
53643--53722
19
4.0
19
76
17
90
20
11
17
51
1.75
53965--54119
83
1.9
84
91
1
258
19
14
16
49
1.79
53969--54119
42
3.6
41
89
2
221
19
14
16
49
1.80
54380--54425
19
2.5
20
79
13
53
52
0
0
47
1.00
54421--54465
23
2.0
23
86
0
63
53
2
2
42
1.25
54789--54840
15
3.5
15
81
5
70
32
17
7
42
1.77
54777--54815
20
2.0
20
84
0
51
33
17
7
41
1.79
54789--54848
15
4.1
15
78
4
68
33
18
8
40
1.80
54789--54848
29
2.0
29
93
3
102
33
18
8
40
1.80
55528--55609
29
2.8
29
94
1
137
32
14
9
42
1.79
60289--60372
29
2.8
29
90
3
132
32
14
9
44
1.77
65545--65611
19
3.5
19
89
0
98
38
10
13
37
1.79
65716--65757
21
2.0
21
95
0
75
23
21
28
26
1.99
65786--65825
20
1.9
22
90
10
66
37
40
10
12
1.77
67476--67509
2
17.0
2
87
0
50
0
44
0
55
0.99
67476--67509
12
2.8
12
100
0
68
0
44
0
55
0.99
72931--73023
31
3.0
31
98
0
177
44
9
16
30
1.79
78703--78781
5
15.8
5
95
0
104
48
0
11
40
1.39
81002--81043
21
2.0
21
85
0
57
54
2
2
40
1.26
80992--81045
21
2.7
20
77
5
54
55
3
1
38
1.28
81460--81486
4
6.8
4
100
0
54
51
22
0
25
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86320--86481
61
2.7
61
81
11
190
43
5
20
30
1.74
86606--86668
30
2.1
30
84
3
81
25
17
11
46
1.81
86861--86952
30
3.1
30
81
6
107
50
14
14
21
1.78
92094--92129
17
2.1
18
89
5
56
61
0
0
38
0.96
95051--95091
21
1.9
21
85
5
55
60
4
4
29
1.38
96666--96705
20
2.0
20
85
0
53
62
0
0
37
0.95
98715--98805
39
2.5
35
84
15
105
10
23
39
26
1.87
99605--99645
20
2.0
20
90
0
64
56
0
7
36
1.27
105675--105732
29
1.9
30
86
6
82
32
6
10
50
1.63
105858--105914
26
2.3
25
85
11
73
49
3
3
43
1.36
106679--106775
35
2.7
36
91
3
160
18
24
20
36
1.95
108437--108470
17
1.9
18
88
5
52
20
20
20
38
1.94

Tables:   1

The End!