Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006467.1 Hibiscus syriacus cultivar Beakdansim tig00015668_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80463

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1631--1684
20
2.7
20
82
8
56
29
9
27
33
1.88
1794--1866
3
24.3
3
83
5
85
41
1
0
57
1.07
1776--1849
18
4.1
18
77
10
80
44
1
0
54
1.08
1776--1866
18
5.4
18
74
19
72
43
1
0
54
1.07
1776--1879
27
3.9
27
78
7
88
48
0
0
50
1.07
7622--7666
21
2.1
21
87
0
63
28
24
17
28
1.97
12177--12219
20
2.1
21
87
8
63
18
13
0
67
1.23
12176--12225
20
2.5
20
75
15
59
18
18
0
64
1.30
16046--16079
17
2.1
16
88
5
50
14
8
0
76
1.01
16571--16819
75
3.3
75
88
1
363
34
15
21
28
1.94
17005--17167
54
3.0
54
80
3
168
38
14
21
25
1.92
17514--17568
22
2.5
22
90
0
83
32
14
10
41
1.81
18256--18370
45
2.5
45
82
2
131
27
20
20
31
1.97
18203--18566
121
3.0
121
90
0
548
25
20
21
32
1.97
18377--18490
45
2.5
45
86
2
147
26
20
19
34
1.96
18422--18632
76
2.8
75
88
2
314
25
19
20
34
1.96
18301--18761
197
2.4
197
90
2
725
24
20
21
34
1.97
18498--18918
121
3.5
121
92
1
709
23
20
21
33
1.97
18377--19007
242
2.6
242
78
9
814
24
21
21
33
1.97
18574--18661
45
2.0
45
97
0
167
22
23
20
32
1.98
18695--18808
45
2.5
45
85
5
140
23
21
21
32
1.98
18203--18882
318
2.1
317
91
1
1094
24
20
21
33
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18740--18882
76
1.9
74
91
2
232
23
20
22
33
1.97
18816--18974
45
3.5
45
92
1
246
23
23
22
30
1.99
18695--19007
166
1.9
166
92
1
529
23
22
21
33
1.97
19164--19250
3
28.3
3
83
4
86
43
0
0
56
0.99
21671--21892
111
2.0
111
96
0
408
33
7
11
48
1.66
22644--22688
22
2.0
22
91
0
72
22
13
33
31
1.92
48065--48507
82
5.4
82
85
4
517
35
14
16
33
1.89
48065--48507
162
2.7
162
85
4
552
35
14
16
33
1.89
50291--50328
20
1.9
20
84
10
51
10
2
18
68
1.30
50402--50438
18
2.1
18
100
0
74
32
10
16
40
1.83
51257--51306
12
4.1
12
74
23
50
14
10
10
66
1.46
51588--53201
807
2.0
806
97
0
3030
34
17
19
28
1.95
56875--56913
20
1.9
20
84
5
51
10
2
17
69
1.28
60144--60189
22
2.0
22
83
4
56
43
6
2
47
1.41
63296--63412
21
5.6
21
76
8
121
21
17
27
33
1.96
63412--63438
6
4.5
6
100
0
54
0
18
48
33
1.49
63455--63502
20
2.4
20
96
0
87
45
22
22
8
1.79
63446--63531
20
4.2
21
78
3
86
40
25
18
15
1.89
67045--67069
12
2.1
12
100
0
50
36
24
40
0
1.55
75029--75087
27
2.1
28
96
3
111
42
10
16
30
1.82
75629--75653
13
1.9
13
100
0
50
44
8
8
40
1.63

Tables:   1

The End!