genome.fa.s6468.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006468.1 Hibiscus syriacus cultivar Beakdansim tig00015669_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92489

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1583--1635	27	2.0	27	100	0	106	33	22	18	24	1.97
10693--10733	21	2.0	21	90	0	64	34	34	12	19	1.89
10742--10909	42	4.0	42	84	9	209	21	19	23	36	1.95
10756--10916	82	1.9	83	89	2	252	21	19	24	33	1.97
10756--10916	21	7.8	21	79	10	163	21	19	24	33	1.97
11772--11883	42	2.7	42	92	0	188	35	21	19	23	1.96
11765--11889	21	5.9	20	73	14	101	34	20	20	24	1.97
12281--12344	35	2.0	34	82	14	82	34	4	0	60	1.17
12292--12481	29	6.3	29	80	8	184	40	4	0	54	1.26
12324--12481	29	5.3	31	83	6	200	41	5	0	52	1.28
12309--12486	60	3.0	59	89	1	248	40	5	0	53	1.29
12324--12509	60	3.1	60	86	3	162	44	4	1	49	1.30
12473--12584	29	3.9	28	76	12	102	55	0	7	36	1.34
12552--12599	18	2.5	19	83	10	71	56	0	2	41	1.11
12840--13511	335	2.0	336	84	3	872	40	8	15	36	1.78
14201--14315	20	5.7	20	81	6	115	30	26	19	23	1.98
14198--14335	41	3.4	41	79	6	145	33	24	18	23	1.97
15048--15107	24	2.5	24	80	0	75	26	16	18	38	1.92
15282--15306	12	2.1	12	100	0	50	72	0	28	0	0.86
17600--17691	19	5.4	19	68	24	87	43	19	21	15	1.87
17600--17726	33	3.8	33	88	4	193	42	18	23	15	1.88
17601--17733	66	2.0	66	95	0	239	41	18	23	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17735--17787	19	2.8	19	97	0	97	13	20	20	45	1.84
17894--17929	13	2.6	14	86	8	56	47	25	0	27	1.52
19276--19342	21	3.2	21	68	4	55	19	20	35	23	1.95
19276--19384	42	2.6	41	81	5	103	22	19	34	23	1.96
19616--19800	91	2.0	90	90	6	291	47	18	12	22	1.82
21489--21629	19	7.8	19	71	17	104	43	19	24	12	1.86
21514--21612	33	3.0	33	90	1	153	39	22	26	12	1.89
22191--22324	41	3.3	42	80	5	132	22	20	26	30	1.98
22191--22303	20	5.6	20	80	6	120	23	19	27	29	1.98
22375--22415	21	2.0	21	85	0	55	34	31	17	17	1.93
27064--27134	35	2.0	36	94	2	126	22	22	7	47	1.75
37232--37274	6	7.2	6	100	0	86	16	32	16	34	1.91
37888--37913	2	13.0	2	100	0	52	50	0	0	50	1.00
47219--47292	32	2.3	32	95	0	130	25	27	5	41	1.77
48314--48373	24	2.6	24	84	5	70	40	20	18	21	1.92
58044--58070	2	13.5	2	100	0	54	48	0	0	51	1.00
60406--60465	29	2.0	30	90	6	95	35	6	15	43	1.72
60545--60599	22	2.5	22	96	0	101	18	36	23	21	1.95
61014--61083	34	2.1	32	84	5	86	34	15	25	24	1.95
71410--71484	37	2.0	37	100	0	150	29	8	20	42	1.80
77445--78580	566	2.0	566	97	0	2164	29	16	14	38	1.89
79678--79745	35	1.9	35	90	0	109	44	25	0	30	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79748--79824	35	2.2	35	85	0	109	44	0	14	41	1.45
80276--80354	14	5.6	14	72	8	61	24	0	25	50	1.49
80641--80756	36	3.4	34	72	22	100	43	1	6	48	1.40
80619--80756	67	2.1	67	84	5	181	43	2	7	47	1.43
81143--81195	20	2.6	22	85	11	53	30	22	15	32	1.94
81156--81195	20	2.0	20	100	0	80	30	25	15	30	1.95
82062--82117	21	2.7	21	94	0	103	26	32	19	21	1.97
82159--82212	20	2.7	20	100	0	108	24	37	20	18	1.94
82060--82307	95	2.6	95	91	4	383	29	27	19	24	1.98
82254--82307	20	2.7	20	82	2	63	25	35	16	22	1.95
91461--91538	19	3.9	19	73	17	59	26	29	24	19	1.98

Tables:   1

The End!