genome.fa.s6469.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006469.1 Hibiscus syriacus cultivar Beakdansim tig00015670_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98011

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3361--3399	18	2.2	18	90	0	60	33	17	15	33	1.92
5876--5929	21	2.5	22	74	14	58	35	16	12	35	1.87
11709--12178	231	2.0	232	99	0	924	33	18	14	33	1.91
13570--13651	7	11.7	7	80	0	74	43	32	1	21	1.61
13574--13654	21	3.8	21	77	11	85	45	29	1	23	1.61
14874--14927	23	2.3	23	100	0	108	33	18	18	29	1.95
14890--14952	11	5.6	11	74	10	56	31	14	23	30	1.94
15545--15595	24	2.1	24	85	0	66	25	5	11	56	1.57
15654--15694	20	2.2	20	86	8	59	21	0	0	78	0.76
15776--15810	12	2.9	12	100	0	70	8	31	34	25	1.86
30367--30455	46	1.9	46	93	0	151	35	13	10	40	1.78
40024--40054	14	2.2	14	100	0	62	35	6	41	16	1.74
43863--43950	29	3.1	29	93	3	160	39	13	19	27	1.89
44391--44467	29	2.8	28	71	15	70	32	0	22	45	1.53
44453--44523	36	2.0	36	91	0	115	35	0	30	33	1.58
45296--45328	17	1.9	17	88	11	50	57	15	12	15	1.65
45788--45826	19	2.1	18	95	4	69	20	7	25	46	1.77
47522--47610	24	3.8	24	89	1	126	26	26	21	24	1.99
47522--47612	11	7.8	11	70	24	62	26	27	20	25	1.99
49047--49099	27	2.0	27	88	0	79	39	9	11	39	1.74
50587--50625	13	2.9	14	84	7	53	48	28	0	23	1.51
50902--50960	28	2.1	28	83	0	73	40	18	3	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51379--51536	21	7.8	20	70	7	77	37	24	17	19	1.93
51504--51893	20	19.5	20	82	5	439	35	25	18	20	1.95
52570--52616	24	2.0	24	87	8	69	25	14	21	38	1.92
52791--52815	12	2.1	12	100	0	50	72	0	28	0	0.86
55095--55368	19	15.4	19	81	15	354	46	17	21	13	1.83
55123--55390	109	2.5	105	91	6	459	46	16	22	14	1.83
55123--55390	52	5.0	52	93	4	455	46	16	22	14	1.83
55397--55479	20	4.6	19	78	15	104	15	24	16	43	1.87
55586--55619	14	2.4	14	95	0	59	44	20	0	35	1.52
57755--57811	14	3.7	14	79	20	69	40	24	26	8	1.84
57747--57830	33	2.5	33	92	0	150	44	21	25	9	1.82
57769--57852	19	4.7	19	81	14	97	42	22	23	10	1.85
57859--57940	33	2.5	33	87	2	110	9	24	21	43	1.83
58039--58109	33	2.2	33	92	0	115	47	18	22	11	1.80
58291--58345	22	2.5	22	81	0	74	20	16	40	23	1.91
58491--58683	20	9.6	20	82	5	219	19	19	25	35	1.95
58491--58683	60	3.2	60	83	0	251	19	19	25	35	1.95
61530--61576	24	2.0	24	95	0	85	48	8	8	34	1.64
62418--62448	2	15.5	2	93	0	53	45	0	0	54	0.99
62417--62451	8	4.4	8	92	0	52	42	0	0	57	0.99
68665--68708	21	2.1	21	100	0	88	38	9	9	43	1.68
70237--70285	2	25.0	2	91	4	82	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72687--72749	32	2.0	32	93	0	108	49	9	6	34	1.61
80289--80333	21	2.1	21	88	8	65	57	6	17	17	1.60
94641--94688	23	2.1	23	88	7	71	43	0	0	56	0.99

Tables:   1

The End!