genome.fa.s647.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000647.1 Hibiscus syriacus cultivar Beakdansim tig00001253_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75953

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480--524	21	2.1	21	83	0	54	31	31	24	13	1.93
553--597	22	2.0	22	86	4	63	31	33	26	8	1.87
852--899	24	2.0	24	84	8	62	37	6	16	39	1.74
1396--1491	32	3.0	32	76	14	117	30	17	17	34	1.94
1397--1494	31	3.2	30	77	11	108	30	19	17	32	1.95
1483--1574	29	3.1	30	87	4	134	21	20	26	31	1.98
1842--1883	2	21.0	2	95	0	75	47	2	0	50	1.14
4709--4752	22	2.0	22	86	0	61	31	31	27	9	1.88
5574--5669	32	3.0	32	78	14	117	29	16	18	35	1.93
5661--5756	30	3.2	30	92	1	158	20	19	27	32	1.97
6026--6061	2	18.0	2	88	0	54	44	2	2	50	1.31
11576--11640	12	5.8	12	76	20	59	38	24	12	24	1.90
11586--11665	22	3.6	22	83	3	99	36	21	16	26	1.94
11579--11665	44	2.0	44	88	4	131	36	21	16	25	1.94
14012--14061	19	2.6	19	100	0	100	20	22	42	16	1.89
14106--14145	21	1.9	21	89	0	62	15	25	32	27	1.95
14355--14428	38	1.9	38	94	0	130	40	10	6	41	1.66
14466--14495	13	2.2	14	94	5	53	40	0	13	46	1.43
21730--21916	76	2.5	77	92	3	301	20	25	32	21	1.98
22131--22203	38	1.9	38	100	0	146	38	12	8	41	1.73
33579--33659	23	3.7	23	73	8	78	28	25	22	23	1.99
34326--34369	21	2.1	21	82	0	52	9	38	15	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35378--35558	81	2.2	82	85	4	240	29	25	18	27	1.98
36498--36543	23	2.0	23	87	8	67	54	10	2	32	1.47
37417--37450	12	2.8	12	90	0	59	64	0	17	17	1.29
37688--37747	20	3.0	20	82	7	68	25	18	28	28	1.98
40750--40786	2	18.5	2	100	0	74	51	0	0	48	1.00
45458--45482	3	8.3	3	100	0	50	32	0	0	68	0.90
55754--55803	2	25.5	2	95	4	93	52	0	0	48	1.00
62519--62635	60	2.0	59	93	1	198	35	20	12	30	1.90
70155--70378	95	2.4	96	86	3	310	28	35	19	16	1.94
70155--70384	48	4.8	48	79	2	250	28	35	19	16	1.94
70627--70738	33	3.4	32	81	7	127	24	29	29	16	1.97
74476--74570	33	2.9	33	85	0	118	31	23	17	27	1.97
74525--74621	51	1.9	51	89	4	151	27	25	21	24	1.99
74579--74655	33	2.3	33	82	8	86	32	22	19	25	1.97
74495--74701	84	2.5	84	88	6	287	28	24	21	25	1.99
74591--74697	51	2.1	51	80	3	117	30	25	19	24	1.98
74775--75130	33	10.9	33	79	6	339	42	23	10	23	1.85
74843--75126	97	2.9	96	85	7	335	43	23	9	22	1.83
74843--75130	65	4.4	64	82	5	330	43	24	9	22	1.82
74848--75176	97	3.4	96	81	6	254	43	24	8	23	1.81

Tables:   1

The End!