genome.fa.s6470.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006470.1 Hibiscus syriacus cultivar Beakdansim tig00015679_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124017

Tables:   1   

This is table  1  of  1  ( 111 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663--722	27	2.2	27	85	5	77	31	13	11	43	1.80
671--723	27	2.0	27	88	7	81	30	15	13	41	1.85
2750--2797	21	2.2	21	88	3	69	43	4	0	52	1.20
3010--3057	16	3.2	15	80	8	53	45	0	2	52	1.12
3029--3068	16	2.5	16	87	0	53	42	2	2	52	1.28
3046--3102	22	2.6	21	77	8	60	38	3	3	54	1.35
3077--3111	15	2.4	14	86	13	52	42	0	2	54	1.15
5222--5289	34	2.0	34	97	0	127	38	7	17	36	1.78
5444--5491	20	2.4	20	89	6	71	41	6	18	33	1.76
5603--5962	187	1.9	188	86	2	510	39	13	15	31	1.87
6849--6928	36	2.2	36	86	8	110	37	13	13	35	1.85
6968--7701	200	3.7	198	82	5	881	39	12	13	34	1.83
8132--8165	5	6.4	5	87	12	50	76	0	0	23	0.79
8772--8820	22	2.2	22	85	0	62	12	10	24	53	1.69
9293--9386	10	9.4	10	92	0	107	47	21	10	20	1.79
9293--9376	5	16.8	5	93	0	87	48	20	9	21	1.77
9293--9380	15	5.9	15	91	0	104	48	20	10	20	1.78
9342--9907	5	114.0	5	94	4	914	40	38	18	2	1.63
9926--10072	12	12.2	12	70	24	62	53	4	0	41	1.27
9986--10072	2	45.5	2	75	22	64	54	3	1	41	1.25
9927--10072	53	2.7	53	79	14	154	53	4	0	41	1.27
9980--10070	34	2.7	34	80	12	109	53	3	1	41	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9964--10072	25	4.4	23	78	17	96	55	3	0	40	1.24
9926--10161	14	17.2	14	77	17	113	49	12	0	38	1.44
10029--10157	7	18.1	7	88	8	100	45	19	0	34	1.50
10069--10155	7	12.6	7	96	2	149	42	25	0	32	1.55
12137--12178	21	2.0	21	95	0	75	21	19	26	33	1.97
21966--22014	20	2.5	20	96	0	89	36	18	8	36	1.81
25121--25170	24	2.1	24	92	0	82	8	44	28	20	1.79
25921--25987	23	3.0	22	80	16	68	65	2	1	29	1.16
25949--26235	7	40.7	7	74	18	206	51	4	1	41	1.32
25951--26235	37	8.3	34	73	20	145	51	4	1	42	1.32
25959--26196	62	3.9	62	74	16	203	52	3	2	41	1.29
25992--26240	16	16.0	16	75	15	118	49	5	2	42	1.39
26553--26936	108	3.5	108	73	12	382	32	15	13	38	1.87
26407--27015	226	2.7	226	89	2	940	32	15	14	38	1.87
29021--29051	2	15.5	2	100	0	62	48	0	0	51	1.00
31668--31720	8	6.5	8	78	18	56	73	1	1	22	1.03
31673--31786	24	4.6	26	72	16	75	74	2	6	16	1.13
31678--31794	17	7.2	17	71	17	72	74	2	6	16	1.14
31727--31800	29	2.6	29	72	20	73	78	1	10	9	1.03
31871--31913	5	8.6	5	86	0	50	62	0	0	37	0.95
32826--33239	37	11.4	35	77	10	347	45	5	2	45	1.42
33054--33078	12	2.1	12	100	0	50	44	8	8	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37439--37502	3	21.7	3	84	9	87	34	0	1	64	1.03
38826--38850	2	12.5	2	100	0	50	52	0	0	48	1.00
39197--39258	22	2.9	22	79	13	76	43	4	3	48	1.40
40104--40153	18	2.9	17	88	11	75	44	8	0	48	1.32
47488--47524	19	2.0	18	89	5	56	24	13	0	62	1.31
51410--51444	18	1.9	18	100	0	70	31	5	5	57	1.46
52384--52435	22	2.4	21	71	9	50	30	13	15	40	1.86
52930--53354	124	3.5	123	86	6	580	40	14	18	26	1.90
53194--53257	20	3.2	20	63	20	53	42	9	23	25	1.84
53590--53628	16	2.5	15	88	12	60	30	0	2	66	1.05
54295--54365	25	2.9	25	75	20	62	26	1	5	66	1.22
54379--54412	2	17.5	2	93	6	61	50	0	0	50	1.00
54989--55035	18	2.6	19	83	10	62	40	8	2	48	1.45
55001--55040	18	2.2	18	90	0	62	40	7	2	50	1.44
56630--56660	16	2.0	15	93	6	53	12	25	41	19	1.87
56807--56866	4	15.0	4	75	6	59	68	0	6	25	1.14
56801--56866	25	2.7	24	83	4	78	66	1	7	24	1.26
56870--57077	35	5.8	35	87	8	267	50	7	0	41	1.35
56870--57157	109	2.7	106	82	8	327	47	7	2	42	1.45
56870--57194	36	9.0	35	77	9	248	47	7	2	42	1.44
56872--57236	36	10.1	35	76	12	210	48	7	2	41	1.45
57858--59273	85	17.0	81	76	8	849	25	19	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57895--59346	249	5.8	250	87	3	2052	25	19	23	30	1.98
57876--59278	169	8.4	169	88	3	1823	25	19	23	30	1.98
62667--62711	19	2.4	19	92	3	74	66	8	13	11	1.44
64456--64498	20	2.1	21	83	12	54	72	6	13	6	1.27
65648--65678	16	2.0	15	93	6	53	12	25	41	19	1.87
65820--65867	23	2.1	23	84	7	62	68	2	8	20	1.26
65886--66209	35	9.1	35	79	9	268	47	7	2	42	1.43
65875--66209	73	4.7	71	79	10	276	48	7	2	42	1.42
65956--66050	13	7.6	13	64	20	51	49	8	0	42	1.33
65888--66251	35	10.1	35	77	11	219	48	7	2	41	1.44
68058--68096	16	2.6	16	88	8	55	53	0	0	46	1.00
72141--72178	17	2.2	17	100	0	76	36	21	23	18	1.95
72801--73222	211	2.0	211	97	0	799	25	14	12	47	1.79
74988--75028	16	2.6	16	81	11	50	26	19	29	24	1.98
74821--75107	98	2.9	97	82	5	328	31	16	18	33	1.93
78871--79296	133	3.2	132	89	2	638	23	20	18	38	1.94
89238--89313	31	2.5	31	84	0	89	28	17	22	31	1.96
95449--95490	21	2.0	21	90	0	66	30	16	7	45	1.74
103679--103730	21	2.5	21	81	3	61	38	19	25	17	1.93
103719--103812	20	4.7	20	77	2	80	35	24	17	23	1.95
103716--103793	41	1.9	41	83	0	102	41	21	15	21	1.90
104332--104412	19	4.5	19	73	16	73	46	24	17	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104408--104573	19	9.1	19	73	16	118	12	21	22	42	1.87
104408--104522	33	3.1	38	78	14	116	10	20	26	41	1.85
104461--104545	33	2.5	33	98	1	161	11	22	28	37	1.89
106574--106696	42	2.9	42	80	2	122	22	36	17	22	1.95
106630--106696	21	3.2	21	66	6	55	23	35	20	19	1.95
108052--108102	14	3.6	14	94	0	93	31	0	23	45	1.53
108284--108444	33	4.9	31	88	6	205	16	21	19	41	1.90
108278--108444	66	2.5	64	85	7	228	17	21	19	41	1.91
110736--110760	12	2.1	12	100	0	50	0	28	0	72	0.86
110935--110988	24	2.2	24	90	0	81	38	20	16	24	1.92
112046--112103	20	2.9	20	94	0	98	37	22	22	17	1.93
112122--112189	19	3.8	19	83	12	92	13	20	17	48	1.80
114204--114270	19	3.5	19	83	4	89	37	23	23	14	1.93
114259--114316	14	3.9	14	79	16	71	48	25	17	8	1.75
114243--114321	32	2.4	33	95	2	142	46	24	18	10	1.80
114349--114406	14	3.9	14	79	16	71	8	17	25	48	1.75
114333--114422	32	2.8	32	96	1	162	11	18	23	46	1.81
114407--114461	20	2.8	19	83	8	65	16	23	23	36	1.94
114931--114978	18	2.7	18	86	0	69	18	14	41	25	1.88
116295--116332	20	1.9	20	88	0	58	50	21	15	13	1.78
122647--122678	16	2.0	16	100	0	64	37	6	31	25	1.81
123748--123796	2	25.5	2	87	8	75	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123748--123796	21	2.5	20	93	6	82	53	0	0	46	1.00

Tables:   1

The End!