genome.fa.s6471.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006471.1 Hibiscus syriacus cultivar Beakdansim tig00015681_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68217

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10327--10735	138	3.0	138	94	1	714	25	22	22	29	1.99
12351--12457	26	4.1	26	97	1	196	31	19	8	40	1.82
14384--14409	7	3.7	7	100	0	52	11	0	0	88	0.52
15080--15274	91	2.1	91	88	2	284	41	12	10	35	1.77
15322--15441	59	2.0	59	82	9	147	32	18	6	42	1.76
18790--19109	138	2.3	137	83	6	391	25	23	18	33	1.97
21442--21515	13	5.3	13	80	15	85	16	45	21	16	1.84
21455--21496	18	2.3	18	95	0	75	16	50	21	11	1.77
21438--21507	31	2.3	31	97	0	131	17	50	20	12	1.78
22822--22857	18	2.0	18	88	0	54	52	0	16	30	1.44
24002--24094	23	4.0	24	83	4	109	23	16	20	39	1.91
24017--24091	24	3.2	24	88	1	107	25	16	21	37	1.93
26277--26350	13	5.3	13	80	15	85	16	45	21	16	1.84
26290--26331	18	2.3	18	95	0	75	16	50	21	11	1.77
26273--26342	31	2.3	31	97	0	131	17	50	20	12	1.78
27659--27694	18	2.0	18	88	0	54	52	0	16	30	1.44
28840--28932	23	4.0	24	83	4	109	23	16	20	39	1.91
28855--28929	24	3.2	24	88	1	107	25	16	21	37	1.93
29898--30113	91	2.4	91	81	6	249	43	11	9	36	1.72
32129--32203	24	3.1	24	76	5	62	46	17	13	22	1.82
32147--32203	25	2.3	24	87	3	78	43	15	15	24	1.86
32147--32252	24	4.4	25	81	8	103	38	16	17	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36808--36883	24	3.1	24	80	3	71	47	17	13	22	1.81
36818--36926	24	4.5	24	84	8	130	41	19	16	22	1.90
39763--39814	26	2.0	26	84	0	68	73	3	7	15	1.21
40507--40631	32	3.9	31	76	11	119	52	4	14	28	1.62
40512--40631	62	1.9	65	81	11	151	51	4	15	29	1.61
50910--51093	30	6.1	30	85	7	257	35	13	8	42	1.75
50933--51125	90	2.1	90	99	0	377	34	13	10	40	1.80
51652--51920	138	1.9	138	85	5	375	24	23	18	33	1.97
53306--53362	3	19.0	3	100	0	114	33	0	0	66	0.92
53818--53852	2	17.5	2	100	0	70	51	0	0	48	1.00
54008--54038	6	5.2	6	92	0	53	38	45	16	0	1.47
54630--54846	40	5.3	40	91	3	344	36	23	17	21	1.94
54630--54846	82	2.7	82	92	1	375	36	23	17	21	1.94
54880--54932	21	2.5	21	100	0	106	16	24	30	28	1.97
54960--55014	19	2.9	19	94	0	92	21	20	23	34	1.97
55421--55516	49	2.0	49	95	0	174	42	9	10	37	1.71
57598--57647	26	1.9	26	91	0	82	52	6	10	32	1.59
57598--57662	26	2.6	25	80	4	78	50	6	12	30	1.64
60826--60873	2	24.5	2	87	4	62	45	0	2	52	1.12
62787--62983	83	2.4	82	83	9	233	24	21	19	33	1.97
62952--63003	20	2.6	19	76	11	50	23	26	23	26	2.00

Tables:   1

The End!