Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006472.1 Hibiscus syriacus cultivar Beakdansim tig00015685_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 187534
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.34
Found at i:4227 original size:17 final size:18
Alignment explanation
Indices: 4205--4248 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
4195 TCTGGTCCTG
*
4205 TTGGGCCTTC-AGGTTAT
1 TTGGGCCTGCTAGGTTAT
*
4222 TTGGGCCTGCTGGGTTAT
1 TTGGGCCTGCTAGGTTAT
4240 TTGGGCCTG
1 TTGGGCCTG
4249 GAGCATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.07, C:0.18, G:0.36, T:0.39
Consensus pattern (18 bp):
TTGGGCCTGCTAGGTTAT
Found at i:6665 original size:301 final size:300
Alignment explanation
Indices: 6108--6698 Score: 860
Period size: 301 Copynumber: 2.0 Consensus size: 300
6098 TCAATAATTT
* * ** * *
6108 AAAGTTGTTTTATAACTAAAAATCTCACCGCAGGTCATCTAGAGTCGGGAATATTTGATAACCTT
1 AAAGTTATTTTATAACTAAAAATCTCACCGCAGGCCATCTAGAGTCAAGAATATTTGATAACATG
* * *
6173 TCTAAATTGCAAGAATTAAGCTTGGAATGGAACCAAATATCTGGTAGCATTCCCAGTAGTTTATA
66 TCTAAATTGCAAGAATTAAGCTTCGAATGGAACCAAATATCTGGTAGCATTCCCAGCAGCTTATA
* * *
6238 TAAGAGCAAAGAGTTGAGGTATTTATCATTGTGGAACAACTCTATGGAAGGAAGTATACCTATAG
131 CAAGAGCAAAGAGTTGAGGTATATATCATTGTGGAACAACACTATGGAAGGAAGTATACCTATAG
* * *
6303 AAATCGGAAATTTGACTATGCTCCAATATTTGTATATTGGTTACAACAATTTCAAAGGTAAAAAA
196 AAATCGGAAATTTGACTATGCTCCAATATTTGTATATTGCTCACAACAACTTCAAAGGTAAAAAA
*
6368 TTCCTCATTTGCATTCCGTTCTCTTTTATTTTCATTACATA
261 -TCCTCATTTGCATTCCGTTCTCCTTTATTTTCATTACATA
* * * * *
6409 AAAGTTATTTTATAATTAACAATCTCACTGCAGGCCATCTTGAGTCAATAATATTTGATAACATG
1 AAAGTTATTTTATAACTAAAAATCTCACCGCAGGCCATCTAGAGTCAAGAATATTTGATAACATG
* * * * *
6474 TCTAAATTGCAAGTATTAAGGTTCG-ATGGGAACCAGATTTCTGGTATCATTCCCAGCAGCTTAT
66 TCTAAATTGCAAGAATTAAGCTTCGAAT-GGAACCAAATATCTGGTAGCATTCCCAGCAGCTTAT
* *
6538 ACAAGTGCAAGGAGTTGAGGTATATATCATTGTGGAACAACACTATGGAAGGAAGTATACCTATA
130 ACAAGAGCAAAGAGTTGAGGTATATATCATTGTGGAACAACACTATGGAAGGAAGTATACCTATA
* * *
6603 GAAATCGGAAATTTGACTATGCTCCAATTTTTGTATCTTGCTCACAACAACTTCAGAGGTAAAAA
195 GAAATCGGAAATTTGACTATGCTCCAATATTTGTATATTGCTCACAACAACTTCAAAGGTAAAAA
* *
6668 ATCCTCATTTGTATTTCGTTCTCCTTTATTT
260 ATCCTCATTTGCATTCCGTTCTCCTTTATTT
6699 AATTAGCTGT
Statistics
Matches: 256, Mismatches: 33, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
300 29 0.11
301 227 0.89
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (300 bp):
AAAGTTATTTTATAACTAAAAATCTCACCGCAGGCCATCTAGAGTCAAGAATATTTGATAACATG
TCTAAATTGCAAGAATTAAGCTTCGAATGGAACCAAATATCTGGTAGCATTCCCAGCAGCTTATA
CAAGAGCAAAGAGTTGAGGTATATATCATTGTGGAACAACACTATGGAAGGAAGTATACCTATAG
AAATCGGAAATTTGACTATGCTCCAATATTTGTATATTGCTCACAACAACTTCAAAGGTAAAAAA
TCCTCATTTGCATTCCGTTCTCCTTTATTTTCATTACATA
Found at i:7355 original size:26 final size:26
Alignment explanation
Indices: 7315--7400 Score: 90
Period size: 26 Copynumber: 3.4 Consensus size: 26
7305 ATAGTAATTT
7315 ATTTA-TTTTTAATTATATTGTCTTA
1 ATTTATTTTTTAATTATATTGTCTTA
* *
7340 ATTTATTTTTTAATTATTTTTTCTATA
1 ATTTATTTTTTAATTATATTGTCT-TA
* *
7367 A--T-GTGTTTAATTATATTGTCTTA
1 ATTTATTTTTTAATTATATTGTCTTA
*
7390 ACTTATTTTTT
1 ATTTATTTTTT
7401 TAACTTGTGC
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
23 3 0.06
24 15 0.31
25 7 0.15
26 20 0.42
27 3 0.06
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.65
Consensus pattern (26 bp):
ATTTATTTTTTAATTATATTGTCTTA
Found at i:8611 original size:10 final size:10
Alignment explanation
Indices: 8596--8625 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
8586 CTTAGAAAGT
8596 TTTCTTGATG
1 TTTCTTGATG
8606 TTTCTTGATG
1 TTTCTTGATG
8616 TTTCTTGATG
1 TTTCTTGATG
8626 GAACAACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.10, C:0.10, G:0.20, T:0.60
Consensus pattern (10 bp):
TTTCTTGATG
Found at i:11181 original size:3 final size:3
Alignment explanation
Indices: 11173--11223 Score: 57
Period size: 3 Copynumber: 16.0 Consensus size: 3
11163 CTTAAAACTT
* *
11173 AGA AGA AGA AGA AGA AGA AGAA AGA ATA AGAA AGA AGAA AGA AGA AAA
1 AGA AGA AGA AGA AGA AGA AG-A AGA AGA AG-A AGA AG-A AGA AGA AGA
11221 AGA
1 AGA
11224 CAGGGGTGGT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
3 32 0.78
4 9 0.22
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:11218 original size:10 final size:10
Alignment explanation
Indices: 11175--11211 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
11165 TAAAACTTAG
11175 AAGAAGAAG-
1 AAGAAGAAGA
11184 AAGAAGAAGA
1 AAGAAGAAGA
*
11194 AAGAATAAGA
1 AAGAAGAAGA
11204 AAGAAGAA
1 AAGAAGAA
11212 AGAAGAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 9 0.36
10 16 0.64
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.03
Consensus pattern (10 bp):
AAGAAGAAGA
Found at i:13665 original size:26 final size:26
Alignment explanation
Indices: 13595--13655 Score: 122
Period size: 26 Copynumber: 2.3 Consensus size: 26
13585 CAATGTTTTT
13595 CCATTCATTTCAAAACTTGAGGATAA
1 CCATTCATTTCAAAACTTGAGGATAA
13621 CCATTCATTTCAAAACTTGAGGATAA
1 CCATTCATTTCAAAACTTGAGGATAA
13647 CCATTCATT
1 CCATTCATT
13656 CTTGGGCTTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (26 bp):
CCATTCATTTCAAAACTTGAGGATAA
Found at i:14794 original size:24 final size:24
Alignment explanation
Indices: 14767--14911 Score: 92
Period size: 24 Copynumber: 6.2 Consensus size: 24
14757 CCATTGAATT
14767 TTTTAATTATATTGTCTTAATTTA
1 TTTTAATTATATTGTCTTAATTTA
*
14791 TTTTAA--CT-TT-TC--AATTTA
1 TTTTAATTATATTGTCTTAATTTA
* * * *
14809 TTTT--TTAACATAGTAATTTATTTA
1 TTTTAATT-ATATTGT-CTTAATTTA
14833 TTTTTAATTATATTGTCTTAATTTA
1 -TTTTAATTATATTGTCTTAATTTA
* * *
14858 TTTTTTAATTATTTTTTCTATAATGT-
1 --TTTTAATTATATTGTCT-TAATTTA
*
14884 GTTTAATTATATTGTCTTAATTTA
1 TTTTAATTATATTGTCTTAATTTA
14908 TTTT
1 TTTT
14912 TTTAACTTGT
Statistics
Matches: 89, Mismatches: 18, Indels: 28
0.66 0.13 0.21
Matches are distributed among these distances:
18 10 0.11
20 3 0.03
21 3 0.03
22 1 0.01
23 5 0.06
24 28 0.31
25 11 0.12
26 21 0.24
27 7 0.08
ACGTcount: A:0.28, C:0.05, G:0.04, T:0.63
Consensus pattern (24 bp):
TTTTAATTATATTGTCTTAATTTA
Found at i:20481 original size:70 final size:70
Alignment explanation
Indices: 20368--20508 Score: 203
Period size: 70 Copynumber: 2.0 Consensus size: 70
20358 GGATTTTTTA
** *
20368 TTCAAAGCAAAGTGTAATGGGGAAGCACTTTTACTTTGCGTCAGGTGTATT-GAGTTTAATAATT
1 TTCAAAGCAAAGTGTAATGGGGAAGCACTCGTACTTTGCGTCAGGTGT-TTCGAATTTAATAATT
20432 CCATGG
65 CCATGG
** * *
20438 TTCAAAGCATTGTGTAGTGGGGAAGCACTCGTACTTTGCGTCAGGTGTTTCGAATTTATTAATTC
1 TTCAAAGCAAAGTGTAATGGGGAAGCACTCGTACTTTGCGTCAGGTGTTTCGAATTTAATAATTC
20503 CATGG
66 CATGG
20508 T
1 T
20509 GGAGGTTAGT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
69 2 0.03
70 61 0.97
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (70 bp):
TTCAAAGCAAAGTGTAATGGGGAAGCACTCGTACTTTGCGTCAGGTGTTTCGAATTTAATAATTC
CATGG
Found at i:27290 original size:72 final size:71
Alignment explanation
Indices: 27211--27352 Score: 176
Period size: 72 Copynumber: 2.0 Consensus size: 71
27201 GGCAATTTGT
* ** ** * *
27211 CAAAACTAGAAACGTTGAGCTTGGGCAACAACAACCTTGAAGGTTAAATCCCCATGACTGTGGGA
1 CAAAACTAGAAACGTTGACCTTGACCAACAACAACCTCAAAGGGT-AATCCCCATGACTATGGGA
*
27276 AGCCTTC
65 AACCTTC
* * *
27283 CAAAACTAGAAGCGTTGACCTTGACCAACAACAATCTCAAAGGGTAATCCCCGTGACTATGGGAA
1 CAAAACTAGAAACGTTGACCTTGACCAACAACAACCTCAAAGGGTAATCCCCATGACTATGGGAA
27348 ACCTT
66 ACCTT
27353 TCACATTTGA
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
71 22 0.37
72 37 0.63
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (71 bp):
CAAAACTAGAAACGTTGACCTTGACCAACAACAACCTCAAAGGGTAATCCCCATGACTATGGGAA
ACCTTC
Found at i:29017 original size:24 final size:23
Alignment explanation
Indices: 28968--29017 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
28958 CCGACCCATT
* *
28968 GACCCGACTCGTTTGACCAACTC
1 GACCCGACCCGTTTGACCAACCC
* *
28991 GACCCGACCCGGTTTGCCCGACCC
1 GACCCGACCC-GTTTGACCAACCC
29015 GAC
1 GAC
29018 TGCCCGACCC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.18, C:0.44, G:0.22, T:0.16
Consensus pattern (23 bp):
GACCCGACCCGTTTGACCAACCC
Found at i:30021 original size:30 final size:32
Alignment explanation
Indices: 29985--30054 Score: 99
Period size: 31 Copynumber: 2.2 Consensus size: 32
29975 TAAGGCGACC
* * *
29985 CTTGGGTATG-CTTTGTGGCCCTGAG-ATTTT
1 CTTGGGTAAGCCTTTGTGGCCCCGAGAATTAT
30015 CTTGGGTAAGCCTTTGTGGCCCCGAGAATTAT
1 CTTGGGTAAGCCTTTGTGGCCCCGAGAATTAT
30047 CTTGGGTA
1 CTTGGGTA
30055 GGTTCGCAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
30 9 0.26
31 14 0.40
32 12 0.34
ACGTcount: A:0.14, C:0.19, G:0.30, T:0.37
Consensus pattern (32 bp):
CTTGGGTAAGCCTTTGTGGCCCCGAGAATTAT
Found at i:33264 original size:17 final size:18
Alignment explanation
Indices: 33242--33285 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
33232 TCTGGTCCTG
*
33242 TTGGGCCTTC-AGGTTAT
1 TTGGGCCTGCTAGGTTAT
*
33259 TTGGGCCTGCTTGGTTAT
1 TTGGGCCTGCTAGGTTAT
33277 TTGGGCCTG
1 TTGGGCCTG
33286 GAACATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.07, C:0.18, G:0.34, T:0.41
Consensus pattern (18 bp):
TTGGGCCTGCTAGGTTAT
Found at i:34380 original size:12 final size:12
Alignment explanation
Indices: 34363--34389 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
34353 ATCAAATACC
34363 TTAGAACTATTT
1 TTAGAACTATTT
34375 TTAGAACTATTT
1 TTAGAACTATTT
34387 TTA
1 TTA
34390 TATTTATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.52
Consensus pattern (12 bp):
TTAGAACTATTT
Found at i:35714 original size:301 final size:300
Alignment explanation
Indices: 35157--35747 Score: 858
Period size: 301 Copynumber: 2.0 Consensus size: 300
35147 TCAATAATTT
* * ** * *
35157 AAAGTTGTTTTATAACTAAAAATCTCACCGCAGGTCATCTAGAGTCGGGAATATTTGATAACCTT
1 AAAGTTATTTTATAACTAAAAATCTCACCGCAGGCCATCTAGAGTCAAGAATATTTGATAACATG
* * *
35222 TCTAAATTGCAAGAATTAAGCTTGGAAGGGAACCAAATATCTGGTAGCATTCCCAGTAGTTTATA
66 TCTAAATTGCAAGAATTAAGCTTCGAAGGGAACCAAATATCTGGTAGCATTCCCAGCAGCTTATA
* * *
35287 CAAGAGCAAAGAGTTGAGGTATTTATCATTGTGGAACAACTCTATGGAAGGAAGTATACCTATAG
131 CAAGAGCAAAGAGTTGAGGTATATATCATTGTGGAACAACACTATGGAAGGAAGTATACATATAG
* * *
35352 AAATCGGAAATTTGACTATGCTCCAATATTTGTATATTGGTTACAACAATTTCAAAGGTAAAAAA
196 AAATCGGAAATTTGACTATGCTCCAATATTTGTATATTGCTCACAACAACTTCAAAGGTAAAAAA
* *
35417 TTCCTCATTTGCATTCCGTTCTCTTTTATTTTCATTACATA
261 -TCCTCATTTGCATTCCGGTCTCCTTTATTTTCATTACATA
* * * * *
35458 AAAGTTATTTTATAATTAACAATCTCACTGCAGGCCATCTTGAGTCAATAATATTTGATAACATG
1 AAAGTTATTTTATAACTAAAAATCTCACCGCAGGCCATCTAGAGTCAAGAATATTTGATAACATG
* * * * * *
35523 TCTAAATTGCAAGTATTAAGGTTCGATGGGAACCAGATTTCTGGTATCATTCCCAGCAGCTTATA
66 TCTAAATTGCAAGAATTAAGCTTCGAAGGGAACCAAATATCTGGTAGCATTCCCAGCAGCTTATA
* *
35588 CAAGTGCAAGGAGTTGAGGTATATATCATTGTGGAACAACACTATGGAAGGAAGTATACATATAG
131 CAAGAGCAAAGAGTTGAGGTATATATCATTGTGGAACAACACTATGGAAGGAAGTATACATATAG
* * *
35653 AAATCGGAAATTTGACTATGCTCCAATTTTTGTATCTTGCTCACAACAACTTCAGAGGTAAAAAA
196 AAATCGGAAATTTGACTATGCTCCAATATTTGTATATTGCTCACAACAACTTCAAAGGTAAAAAA
* *
35718 TCCTCATTTGTATTTCGGTCTCCTTTATTT
261 TCCTCATTTGCATTCCGGTCTCCTTTATTT
35748 AATTAGCTGT
Statistics
Matches: 255, Mismatches: 35, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
300 26 0.10
301 229 0.90
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (300 bp):
AAAGTTATTTTATAACTAAAAATCTCACCGCAGGCCATCTAGAGTCAAGAATATTTGATAACATG
TCTAAATTGCAAGAATTAAGCTTCGAAGGGAACCAAATATCTGGTAGCATTCCCAGCAGCTTATA
CAAGAGCAAAGAGTTGAGGTATATATCATTGTGGAACAACACTATGGAAGGAAGTATACATATAG
AAATCGGAAATTTGACTATGCTCCAATATTTGTATATTGCTCACAACAACTTCAAAGGTAAAAAA
TCCTCATTTGCATTCCGGTCTCCTTTATTTTCATTACATA
Found at i:36403 original size:26 final size:26
Alignment explanation
Indices: 36363--36448 Score: 99
Period size: 26 Copynumber: 3.4 Consensus size: 26
36353 ATAGTAATTT
36363 ATTTA-TTTTTAATTATATTGTCTTA
1 ATTTATTTTTTAATTATATTGTCTTA
* *
36388 ATTTATTTTTTAATTATTTTTTCTATA
1 ATTTATTTTTTAATTATATTGTCT-TA
* *
36415 A--T-GTGTTTAATTATATTGTCTTA
1 ATTTATTTTTTAATTATATTGTCTTA
36438 ATTTATTTTTT
1 ATTTATTTTTT
36449 TAACTTGTGC
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
23 3 0.06
24 15 0.31
25 7 0.15
26 20 0.42
27 3 0.06
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (26 bp):
ATTTATTTTTTAATTATATTGTCTTA
Found at i:37658 original size:10 final size:10
Alignment explanation
Indices: 37643--37672 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
37633 CTTAGAAAGT
37643 TTTCTTGATG
1 TTTCTTGATG
37653 TTTCTTGATG
1 TTTCTTGATG
37663 TTTCTTGATG
1 TTTCTTGATG
37673 GAACAACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.10, C:0.10, G:0.20, T:0.60
Consensus pattern (10 bp):
TTTCTTGATG
Found at i:39985 original size:10 final size:10
Alignment explanation
Indices: 39958--39998 Score: 59
Period size: 10 Copynumber: 4.3 Consensus size: 10
39948 CTTAAAACTT
39958 AGAAGAAG-A
1 AGAAGAAGAA
39967 AGAAGAAGAA
1 AGAAGAAGAA
*
39977 AGAATAAGAA
1 AGAAGAAGAA
39987 AGAAGAA-AA
1 AGAAGAAGAA
39996 AGA
1 AGA
39999 CAGGGGTGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 13 0.45
10 16 0.55
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (10 bp):
AGAAGAAGAA
Found at i:43627 original size:26 final size:26
Alignment explanation
Indices: 43587--43672 Score: 99
Period size: 26 Copynumber: 3.4 Consensus size: 26
43577 ATAGTAATTT
43587 ATTTA-TTTTTAATTATATTGTCTTA
1 ATTTATTTTTTAATTATATTGTCTTA
* *
43612 ATTTATTTTTTAATTATTTTTTCTATA
1 ATTTATTTTTTAATTATATTGTCT-TA
* *
43639 A--T-GTGTTTAATTATATTGTCTTA
1 ATTTATTTTTTAATTATATTGTCTTA
43662 ATTTATTTTTT
1 ATTTATTTTTT
43673 TAACTTGTGC
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
23 3 0.06
24 15 0.31
25 7 0.15
26 20 0.42
27 3 0.06
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (26 bp):
ATTTATTTTTTAATTATATTGTCTTA
Found at i:44886 original size:10 final size:10
Alignment explanation
Indices: 44871--44900 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
44861 CTTAGAAAGT
44871 TTTCTTGATG
1 TTTCTTGATG
44881 TTTCTTGATG
1 TTTCTTGATG
44891 TTTCTTGATG
1 TTTCTTGATG
44901 GAACAACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.10, C:0.10, G:0.20, T:0.60
Consensus pattern (10 bp):
TTTCTTGATG
Found at i:47469 original size:10 final size:10
Alignment explanation
Indices: 47442--47482 Score: 59
Period size: 10 Copynumber: 4.3 Consensus size: 10
47432 CTTAAAACTT
47442 AGAAGAAG-A
1 AGAAGAAGAA
47451 AGAAGAAGAA
1 AGAAGAAGAA
*
47461 AGAATAAGAA
1 AGAAGAAGAA
47471 AGAAGAA-AA
1 AGAAGAAGAA
47480 AGA
1 AGA
47483 CAGGGGTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 13 0.45
10 16 0.55
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (10 bp):
AGAAGAAGAA
Found at i:51084 original size:14 final size:14
Alignment explanation
Indices: 51067--51139 Score: 56
Period size: 13 Copynumber: 5.8 Consensus size: 14
51057 TTATTTATTT
51067 TTAATTATATTGTC
1 TTAATTATATTGTC
*
51081 TTAATT-TATT-TT
1 TTAATTATATTGTC
*
51093 TTAATTAT-TTTTC
1 TTAATTATATTGTC
51106 -T-A-TA-ATGTGT-
1 TTAATTATAT-TGTC
51116 TTAATTATATTGTC
1 TTAATTATATTGTC
51130 TTAATT-TATT
1 TTAATTATATT
51140 TTTTAACTTG
Statistics
Matches: 47, Mismatches: 3, Indels: 19
0.68 0.04 0.28
Matches are distributed among these distances:
10 3 0.06
11 4 0.09
12 11 0.23
13 15 0.32
14 14 0.30
ACGTcount: A:0.27, C:0.04, G:0.05, T:0.63
Consensus pattern (14 bp):
TTAATTATATTGTC
Found at i:51093 original size:25 final size:25
Alignment explanation
Indices: 51059--51142 Score: 102
Period size: 25 Copynumber: 3.4 Consensus size: 25
51049 ATAGTAATTT
51059 ATTTATTTTTAATTATATTGTCTTA
1 ATTTATTTTTAATTATATTGTCTTA
*
51084 ATTTATTTTTTAATTAT-TTTTCTATA
1 ATTTA-TTTTTAATTATATTGTCT-TA
* *
51110 A--TGTGTTTAATTATATTGTCTTA
1 ATTTATTTTTAATTATATTGTCTTA
51133 ATTTATTTTT
1 ATTTATTTTT
51143 TAACTTGTGC
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
23 13 0.27
24 6 0.12
25 15 0.31
26 14 0.29
ACGTcount: A:0.26, C:0.04, G:0.05, T:0.65
Consensus pattern (25 bp):
ATTTATTTTTAATTATATTGTCTTA
Found at i:51099 original size:26 final size:26
Alignment explanation
Indices: 51059--51145 Score: 103
Period size: 26 Copynumber: 3.5 Consensus size: 26
51049 ATAGTAATTT
51059 ATTTA-TTTTTAATTATATTGTCTTA
1 ATTTATTTTTTAATTATATTGTCTTA
*
51084 ATTTATTTTTTAATTAT-TTTTCTATA
1 ATTTATTTTTTAATTATATTGTCT-TA
* *
51110 A--T-GTGTTTAATTATATTGTCTTA
1 ATTTATTTTTTAATTATATTGTCTTA
51133 ATTTATTTTTTAA
1 ATTTATTTTTTAA
51146 CTTGTGCAAC
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
23 13 0.26
24 6 0.12
25 11 0.22
26 20 0.40
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (26 bp):
ATTTATTTTTTAATTATATTGTCTTA
Found at i:52347 original size:10 final size:10
Alignment explanation
Indices: 52332--52361 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
52322 CTTAGAAAGT
52332 TTTCTTGATG
1 TTTCTTGATG
52342 TTTCTTGATG
1 TTTCTTGATG
52352 TTTCTTGATG
1 TTTCTTGATG
52362 GAACAACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.10, C:0.10, G:0.20, T:0.60
Consensus pattern (10 bp):
TTTCTTGATG
Found at i:54656 original size:10 final size:10
Alignment explanation
Indices: 54629--54669 Score: 59
Period size: 10 Copynumber: 4.3 Consensus size: 10
54619 CTTAAAACTT
54629 AGAAGAAG-A
1 AGAAGAAGAA
54638 AGAAGAAGAA
1 AGAAGAAGAA
*
54648 AGAATAAGAA
1 AGAAGAAGAA
54658 AGAAGAA-AA
1 AGAAGAAGAA
54667 AGA
1 AGA
54670 CAGGGGTGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 13 0.45
10 16 0.55
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (10 bp):
AGAAGAAGAA
Found at i:58286 original size:26 final size:26
Alignment explanation
Indices: 58246--58331 Score: 99
Period size: 26 Copynumber: 3.4 Consensus size: 26
58236 ATAGTAATTT
58246 ATTTA-TTTTTAATTATATTGTCTTA
1 ATTTATTTTTTAATTATATTGTCTTA
* *
58271 ATTTATTTTTTAATTATTTTTTCTATA
1 ATTTATTTTTTAATTATATTGTCT-TA
* *
58298 A--T-GTGTTTAATTATATTGTCTTA
1 ATTTATTTTTTAATTATATTGTCTTA
58321 ATTTATTTTTT
1 ATTTATTTTTT
58332 TAACTTGTGC
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
23 3 0.06
24 15 0.31
25 7 0.15
26 20 0.42
27 3 0.06
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (26 bp):
ATTTATTTTTTAATTATATTGTCTTA
Found at i:59533 original size:10 final size:10
Alignment explanation
Indices: 59518--59548 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
59508 AGCTTAGAAA
59518 GTTTCTTGAT
1 GTTTCTTGAT
59528 GTTTCTTGAT
1 GTTTCTTGAT
59538 GTTTCTTGAT
1 GTTTCTTGAT
59548 G
1 G
59549 GAACAACCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.10, C:0.10, G:0.23, T:0.58
Consensus pattern (10 bp):
GTTTCTTGAT
Found at i:61843 original size:28 final size:29
Alignment explanation
Indices: 61812--61868 Score: 98
Period size: 28 Copynumber: 2.0 Consensus size: 29
61802 AATTTTCAGT
61812 CGGTTAATTTTGATGG-GTTTTAATGAAA
1 CGGTTAATTTTGATGGTGTTTTAATGAAA
*
61840 CGGTTAATTTTGATGGTTTTTTAATGAAA
1 CGGTTAATTTTGATGGTGTTTTAATGAAA
61869 ATTTTTCTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 16 0.59
29 11 0.41
ACGTcount: A:0.28, C:0.04, G:0.23, T:0.46
Consensus pattern (29 bp):
CGGTTAATTTTGATGGTGTTTTAATGAAA
Found at i:62449 original size:7 final size:7
Alignment explanation
Indices: 62437--62473 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
62427 TCCGTTAGAC
62437 CTTTCTT
1 CTTTCTT
62444 CTTTCTT
1 CTTTCTT
62451 CTTTCTT
1 CTTTCTT
62458 CTTTCTT
1 CTTTCTT
62465 C-TTCTT
1 CTTTCTT
62471 CTT
1 CTT
62474 CACAAATGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.21
7 23 0.79
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (7 bp):
CTTTCTT
Found at i:65638 original size:54 final size:54
Alignment explanation
Indices: 65522--65630 Score: 134
Period size: 54 Copynumber: 2.0 Consensus size: 54
65512 ATTAAAGAAT
**
65522 ATATATATATAATAATAATAATAAAATATAGTAAAAAAATAAATGAAAATAATTTA
1 ATATATATAT-AT-ATAATAATAAAATATAGTAAAAAAATAAATGAAAATAAAATA
*
65578 ATATATATATATATAATAATAACATGA-A-TAATAAAAATAAATGAAAA-AAAATA
1 ATATATATATATATAATAATAAAAT-ATAGTAA-AAAAATAAATGAAAATAAAATA
65631 TCCATATAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
53 7 0.15
54 28 0.58
55 3 0.06
56 10 0.21
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (54 bp):
ATATATATATATATAATAATAAAATATAGTAAAAAAATAAATGAAAATAAAATA
Found at i:66038 original size:37 final size:37
Alignment explanation
Indices: 65988--66091 Score: 136
Period size: 37 Copynumber: 2.8 Consensus size: 37
65978 GTGCTTGTGG
* * * * *
65988 ATCCTATCTTTAGGAATTTAAATCTTAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAAAACTCT
* * *
66025 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTTT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAAAACTCT
66062 ATCCTATTTTTAGGAGTTTGAATCCTAGTA
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTA
66092 TGACGAAAAT
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.42
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGTAAAACTCT
Found at i:66939 original size:105 final size:105
Alignment explanation
Indices: 66635--67265 Score: 923
Period size: 105 Copynumber: 6.0 Consensus size: 105
66625 GCATTGTTCC
* * ** * *
66635 GAGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTG-GAACCGGGAAATTGTTTGTTGAAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAG-ATTGGGAAGTTG-TTGTTGACA
* * * * * *
66699 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACATGTGTTGTCTC
64 AGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
66741 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGA-A-T--GAAATT-TTGTTGACAAG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAG
* *
66801 CAGCGGTCCCTTCATCGTGGAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
66841 GAGTCCAATATCCTTCGTTGTGAAGTTAAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAG
*
66906 CAGCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
66946 GAGTCCAATATCCTTCGATGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAG
67011 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
67051 AAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTGTTGACAAG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAG
67116 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
67156 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTG-TTGTTGACAA
* * * * *
67221 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTC
65 GCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
67262 GAGT
1 GAGT
67266 GTCACGATAT
Statistics
Matches: 486, Mismatches: 32, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
100 80 0.16
101 1 0.00
102 7 0.01
104 5 0.01
105 307 0.63
106 86 0.18
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (105 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAG
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:67512 original size:36 final size:36
Alignment explanation
Indices: 67465--67540 Score: 116
Period size: 36 Copynumber: 2.1 Consensus size: 36
67455 TGTTTGGAGA
* *
67465 GAAACTGTCTCAAGGGAGACAAAATTCGTTTCAAGG
1 GAAACTATCTCAAGGGAGACAAAATTCATTTCAAGG
* *
67501 GAAACTATCTCAAGTGAGATAAAATTCATTTCAAGG
1 GAAACTATCTCAAGGGAGACAAAATTCATTTCAAGG
67537 GAAA
1 GAAA
67541 TGTTTTCAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (36 bp):
GAAACTATCTCAAGGGAGACAAAATTCATTTCAAGG
Found at i:67715 original size:39 final size:39
Alignment explanation
Indices: 67661--67735 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
67651 TCAATGTTTA
* *
67661 TGTTTCAAGAGAAACTGTCTCAAGG-GAGACAAAATTTTC
1 TGTTTCAAGAGAAACTATCTC-AGGAGAGAAAAAATTTTC
* *
67700 TGTTTCGAGGGAAACTATCTCAGGAGAGAAAAAATT
1 TGTTTCAAGAGAAACTATCTCAGGAGAGAAAAAATT
67736 AATTTCAAGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 3 0.10
39 28 0.90
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (39 bp):
TGTTTCAAGAGAAACTATCTCAGGAGAGAAAAAATTTTC
Found at i:67774 original size:105 final size:104
Alignment explanation
Indices: 67440--67758 Score: 527
Period size: 105 Copynumber: 3.1 Consensus size: 104
67430 TTCGTTAAAT
* ** *
67440 TGTTTTCAAAGTTTATGTTTGGAGAGAAACTGTCTCAAGGGAGACAAAA--TTC-GTTTCAAGGG
1 TGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTCTGTTTCGAGGG
* *
67502 AAACTATCTCAAGTGAGATAAAATTCATTTCAAGGGAAA
66 AAACTATCTCAAGAGAGAAAAAATTCATTTCAAGGGAAA
67541 TGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTCTGTTTCGAGGG
1 TGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTCTGTTTCGAGGG
*
67606 AAACTATCTCAAGAGAGAAAAAAAATCATTTCAAGGGAAA
66 AAACTATCTCAAGAGAG-AAAAAATTCATTTCAAGGGAAA
67646 TGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTCTGTTTCGAGGG
1 TGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTCTGTTTCGAGGG
* *
67711 AAACTATCTCAGGAGAGAAAAAATTAATTTCAAGGGAAA
66 AAACTATCTCAAGAGAGAAAAAATTCATTTCAAGGGAAA
67750 TGTTTTCAA
1 TGTTTTCAA
67759 GAGAAACTGT
Statistics
Matches: 204, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
101 46 0.23
103 3 0.01
104 54 0.26
105 101 0.50
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.31
Consensus pattern (104 bp):
TGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTCTGTTTCGAGGG
AAACTATCTCAAGAGAGAAAAAATTCATTTCAAGGGAAA
Found at i:67898 original size:73 final size:74
Alignment explanation
Indices: 67807--67944 Score: 176
Period size: 76 Copynumber: 1.9 Consensus size: 74
67797 AGGGAAACTA
*
67807 TCTCAAGCAAGATAAAATC-T-TCTTAA-AAAAACAGCCTTGAGTGAAATGAAATGCCTTCTTTC
1 TCTCAAGCAAGATAAAATCTTGTCTTAAGAAAAACAACCTTGAGTGAAAT-AAAT--CTTCTTTC
67869 GAGTGAGAACGG
63 GAGTGAGAACGG
* * * *
67881 TCTCAAGCGAGA-CAAATCTTGTTTTAAGAAAAACAATCTTGAGTGAAATAAATCTTCTTTCGAG
1 TCTCAAGCAAGATAAAATCTTGTCTTAAGAAAAACAACCTTGAGTGAAATAAATCTTCTTTCGAG
67945 AAAAACAATC
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
73 16 0.29
74 12 0.21
75 9 0.16
76 19 0.34
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (74 bp):
TCTCAAGCAAGATAAAATCTTGTCTTAAGAAAAACAACCTTGAGTGAAATAAATCTTCTTTCGAG
TGAGAACGG
Found at i:67976 original size:72 final size:74
Alignment explanation
Indices: 67829--68003 Score: 198
Period size: 72 Copynumber: 2.4 Consensus size: 74
67819 TAAAATCTTC
** * * **
67829 TTAA-AAAAACAGCCTTGAGTGAAATGAAATGCCTTCTTTCGAGTGAGAACGGTCTCAAGCGAGA
1 TTAAGAAAAACAATCTTGAGTGAAAT-AAAT-CCTTCTTTCGAGTAAAAACAATCTCAAGCGAGA
*
67893 CAAATCTTGTT
64 CAAATCATGTT
*
67904 TTAAGAAAAACAATCTTGAGTGAAATAAAT-CTTCTTTCGAG-AAAAACAATCTCAAGTGAGACA
1 TTAAGAAAAACAATCTTGAGTGAAATAAATCCTTCTTTCGAGTAAAAACAATCTCAAGCGAGACA
67967 AAGT-ATGTT
66 AA-TCATGTT
*
67976 TTAAGAAAAACAAAT-TTGAGTGAGATAA
1 TTAAGAAAAAC-AATCTTGAGTGAAATAA
68004 TCATCTGCAT
Statistics
Matches: 88, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
72 46 0.52
73 15 0.17
75 8 0.09
76 19 0.22
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.27
Consensus pattern (74 bp):
TTAAGAAAAACAATCTTGAGTGAAATAAATCCTTCTTTCGAGTAAAAACAATCTCAAGCGAGACA
AATCATGTT
Found at i:67983 original size:36 final size:35
Alignment explanation
Indices: 67881--67988 Score: 101
Period size: 36 Copynumber: 3.0 Consensus size: 35
67871 GTGAGAACGG
* *
67881 TCTCAAGCGAGACAAATCTTGTTTTAAGAAAAACAA
1 TCTCAAGTGAGACAAAT-ATGTTTTAAGAAAAACAA
** * * * *
67917 TCTTGAGTGAAATAAATCT-TCTTTCGAGAAAAACAA
1 TCTCAAGTGAGACAAATATGT-TTT-AAGAAAAACAA
67953 TCTCAAGTGAGACAAAGTATGTTTTAAGAAAAACAA
1 TCTCAAGTGAGACAAA-TATGTTTTAAGAAAAACAA
67989 ATTTGAGTGA
Statistics
Matches: 55, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
34 1 0.02
35 4 0.07
36 44 0.80
37 5 0.09
38 1 0.02
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.27
Consensus pattern (35 bp):
TCTCAAGTGAGACAAATATGTTTTAAGAAAAACAA
Found at i:69452 original size:183 final size:183
Alignment explanation
Indices: 69144--69680 Score: 986
Period size: 183 Copynumber: 2.9 Consensus size: 183
69134 ATCAGGTTTA
* *
69144 ACTGAAGGGTTCATCTCATCACAAAGTCTTTGACCTGACAAAAGCAGTGGAGCAAACACCAAATT
1 ACTGAAGGGTTCATCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCGAATT
* **
69209 GCCAAGTGTCCGAGCAATGTCAT-GATTTGAATGTAATCTATTCATAAAGCCAGGGCTTTCGAGT
66 GCCAAGTGTCCGAGCAGTGTCATAG-TTTGAACATAATCTATTCATAAAGCCAGGGCTTTCGAGT
*
69273 TTCCTCTATAACAAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATC
130 TTCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATC
69327 ACTGAAGGGTTCATCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCGAATT
1 ACTGAAGGGTTCATCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCGAATT
69392 GCCAAGTGTCCGAGCAGTGTCATAGTTTGAACATAATCTATTCATAAAGCCAGGGCTTTCGAGTT
66 GCCAAGTGTCCGAGCAGTGTCATAGTTTGAACATAATCTATTCATAAAGCCAGGGCTTTCGAGTT
*
69457 TCCTCTATAACCAATTTCCTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATC
131 TCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATC
*
69510 ACTGAAGGATTCATCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCGAATT
1 ACTGAAGGGTTCATCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCGAATT
69575 GCCAAGTGTCCGAGCAGTGTCATAGTTTGAACATAATCTATTCATAAAGCCAGGGCTTTCGAGTT
66 GCCAAGTGTCCGAGCAGTGTCATAGTTTGAACATAATCTATTCATAAAGCCAGGGCTTTCGAGTT
69640 TCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTA
131 TCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTA
69681 CGGATTTAAT
Statistics
Matches: 344, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
183 343 1.00
184 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (183 bp):
ACTGAAGGGTTCATCTCATCACAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCGAATT
GCCAAGTGTCCGAGCAGTGTCATAGTTTGAACATAATCTATTCATAAAGCCAGGGCTTTCGAGTT
TCCTCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATC
Found at i:73200 original size:19 final size:19
Alignment explanation
Indices: 73167--73203 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
73157 TGCAGATGAT
73167 GGAAATAAAATAAAAGAGA
1 GGAAATAAAATAAAAGAGA
73186 GGAAA-AAAATGAAAAGAG
1 GGAAATAAAAT-AAAAGAG
73204 TCAGTAAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.68, C:0.00, G:0.24, T:0.08
Consensus pattern (19 bp):
GGAAATAAAATAAAAGAGA
Found at i:74408 original size:2 final size:2
Alignment explanation
Indices: 74397--74434 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
74387 AAAAAAAAAA
*
74397 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74435 CAAAGTATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:74653 original size:10 final size:9
Alignment explanation
Indices: 74624--74690 Score: 66
Period size: 10 Copynumber: 7.3 Consensus size: 9
74614 TTTTTTTTTA
74624 AAAAATAAT
1 AAAAATAAT
*
74633 -AATATAAT
1 AAAAATAAT
74641 AAAAATGAAT
1 AAAAAT-AAT
74651 AAAAA-AAT
1 AAAAATAAT
*
74659 GAAAATAAT
1 AAAAATAAT
74668 AAAAAATAAT
1 -AAAAATAAT
*
74678 ATAAATATAT
1 AAAAATA-AT
74688 AAA
1 AAA
74691 GTTATAAGAT
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
8 14 0.30
9 13 0.28
10 20 0.43
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (9 bp):
AAAAATAAT
Found at i:74684 original size:16 final size:16
Alignment explanation
Indices: 74625--74674 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 16
74615 TTTTTTTTAA
* *
74625 AAAATAATAATATAATA
1 AAAATAATAA-AAAATG
74642 AAAATGAATAAAAAAATG
1 AAAAT-AAT-AAAAAATG
74660 AAAATAATAAAAAAT
1 AAAATAATAAAAAAT
74675 AATATAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
16 7 0.24
17 8 0.28
18 12 0.41
19 2 0.07
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (16 bp):
AAAATAATAAAAAATG
Found at i:74964 original size:18 final size:17
Alignment explanation
Indices: 74941--74983 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
74931 ATGTATACAT
74941 ATAATAATAATAACATGA
1 ATAATAATAATAA-ATGA
*
74959 ATAATAAAAATAAATGA
1 ATAATAATAATAAATGA
74976 ATAA-AATA
1 ATAATAATA
74984 TCCATATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 12 0.52
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (17 bp):
ATAATAATAATAAATGA
Found at i:75391 original size:37 final size:37
Alignment explanation
Indices: 75341--75445 Score: 129
Period size: 37 Copynumber: 2.8 Consensus size: 37
75331 GTGCTTGTGG
* * * *
75341 ATCCTATATTTAGGAATTTAAATCTTAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
* * * *
75378 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTTT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
*
75415 ATCATATTTTTAGGAGTTTGAATCCTAGTAG
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
75446 GACGAAAATG
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.42
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
Found at i:77779 original size:88 final size:89
Alignment explanation
Indices: 77621--77854 Score: 409
Period size: 88 Copynumber: 2.7 Consensus size: 89
77611 ATAGCAAAAG
*
77621 GGGAACCAACCTAAGGATATACCTTGGAGCCTATGGGCCTACCCAAGGATATCCTTAGATCCATA
1 GGGAACCAACCTAAGGATATACCTTGGGGCCTATGGGCCTACCCAAGGATATCCTTAGATCCATA
*
77686 GGGTTACCTTAAGCACACAACAAA
66 GGGTTACCTTAAGAACACAACAAA
*
77710 GGGAACCAACCTAAGGATATACCTTGGGGCCTAT-GGCCTACCCAAGGATATCCTTAGATCCGTA
1 GGGAACCAACCTAAGGATATACCTTGGGGCCTATGGGCCTACCCAAGGATATCCTTAGATCCATA
77774 GGGTTACCTTAAGAACACAACAAA
66 GGGTTACCTTAAGAACACAACAAA
* *
77798 GGGAACCAACCTAAGGATATGCCTT-GGGCCTATGGGCCTACCCAAGGGTATCCTTAG
1 GGGAACCAACCTAAGGATATACCTTGGGGCCTATGGGCCTACCCAAGGATATCCTTAG
77855 GTCTCTAAGG
Statistics
Matches: 139, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
87 8 0.06
88 98 0.71
89 33 0.24
ACGTcount: A:0.31, C:0.26, G:0.23, T:0.21
Consensus pattern (89 bp):
GGGAACCAACCTAAGGATATACCTTGGGGCCTATGGGCCTACCCAAGGATATCCTTAGATCCATA
GGGTTACCTTAAGAACACAACAAA
Found at i:80553 original size:13 final size:13
Alignment explanation
Indices: 80535--80560 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80525 TGGGTTCGAT
80535 CGGGTCGGGTCAA
1 CGGGTCGGGTCAA
80548 CGGGTCGGGTCAA
1 CGGGTCGGGTCAA
80561 ACTGGGTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.46, T:0.15
Consensus pattern (13 bp):
CGGGTCGGGTCAA
Found at i:84643 original size:17 final size:17
Alignment explanation
Indices: 84621--84658 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
84611 GGTCTGACCC
*
84621 GACCCGACCCGTCCGTT
1 GACCCGACCCGACCGTT
84638 GACCCGACCCGACCGTT
1 GACCCGACCCGACCGTT
84655 GACC
1 GACC
84659 ATTGACCTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.16, C:0.47, G:0.24, T:0.13
Consensus pattern (17 bp):
GACCCGACCCGACCGTT
Found at i:91883 original size:19 final size:18
Alignment explanation
Indices: 91859--91909 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 18
91849 AACCGGTTTC
91859 GACCGGTTCTAACCAGTCT
1 GACCGG-TCTAACCAGTCT
* *
91878 GACCGGTCTGAACCGGTTT
1 GACCGGTCT-AACCAGTCT
91897 GACCGGTCTAACC
1 GACCGGTCTAACC
91910 CGACCCGACC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 7 0.24
19 22 0.76
ACGTcount: A:0.20, C:0.31, G:0.25, T:0.24
Consensus pattern (18 bp):
GACCGGTCTAACCAGTCT
Found at i:95465 original size:2 final size:2
Alignment explanation
Indices: 95454--95493 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
95444 TTAAATATTC
95454 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
95494 AACCATATTG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:98111 original size:23 final size:24
Alignment explanation
Indices: 98063--98112 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
98053 AGAGGGAGAG
*
98063 GAAAAAGTGTTATAAAAGGCAGAA
1 GAAAAAGTGTCATAAAAGGCAGAA
*
98087 GAAAAAGTGTCATAAAA-GCATAA
1 GAAAAAGTGTCATAAAAGGCAGAA
98110 GAA
1 GAA
98113 TATGTTTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 8 0.33
24 16 0.67
ACGTcount: A:0.56, C:0.06, G:0.22, T:0.16
Consensus pattern (24 bp):
GAAAAAGTGTCATAAAAGGCAGAA
Found at i:98695 original size:61 final size:60
Alignment explanation
Indices: 98612--98735 Score: 146
Period size: 61 Copynumber: 2.0 Consensus size: 60
98602 GCATCACATG
* * *
98612 TCCCTAAATTATGACTCTTATTTTAAGTTGGTCCTTAAA-TTTTACAA-ATGTTCTAATTTCA
1 TCCCTAAATTATAACTCTTATTTTAAATTAGTCCTTAAACTTTTA-AATAT-TTC-AATTTCA
* *
98673 TCCCTACATTATAACTAC-TATTTTAAATTAGTTCTTAAACTTTTAAATATTTCAATTTCA
1 TCCCTAAATTATAACT-CTTATTTTAAATTAGTCCTTAAACTTTTAAATATTTCAATTTCA
98733 TCC
1 TCC
98736 TCAAACTCTG
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
60 10 0.18
61 37 0.67
62 8 0.15
ACGTcount: A:0.31, C:0.18, G:0.05, T:0.46
Consensus pattern (60 bp):
TCCCTAAATTATAACTCTTATTTTAAATTAGTCCTTAAACTTTTAAATATTTCAATTTCA
Found at i:99038 original size:60 final size:59
Alignment explanation
Indices: 98964--99112 Score: 176
Period size: 60 Copynumber: 2.5 Consensus size: 59
98954 AATGTATGGG
* * *
98964 GACCAATTTAGAATGAATGTCATAGTTTGGGAATGGAATTAAAATGTTCAAAAGTTTAAA
1 GACCAACTTAGAATGAATGTCATAGTTTGGG-ATGAAATTAAAATATTCAAAAGTTTAAA
* *
99024 GACTAACTTAGAATGGTAA--TCATAGTTTAGGGATGAAATTAAAATATTTAAAAGTTTAAA
1 GACCAACTTAGAAT-G-AATGTCATAGTTT-GGGATGAAATTAAAATATTCAAAAGTTTAAA
* * *
99084 GACCAATTTAAAATGAATGTCACAGTTTG
1 GACCAACTTAGAATGAATGTCATAGTTTG
99113 AAGATATATG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
58 2 0.03
59 2 0.03
60 65 0.87
61 4 0.05
62 2 0.03
ACGTcount: A:0.42, C:0.07, G:0.18, T:0.32
Consensus pattern (59 bp):
GACCAACTTAGAATGAATGTCATAGTTTGGGATGAAATTAAAATATTCAAAAGTTTAAA
Found at i:103897 original size:15 final size:15
Alignment explanation
Indices: 103877--103915 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
103867 TCTGGTTCTT
103877 GTTCATCTTGTGCTG
1 GTTCATCTTGTGCTG
*
103892 GTTCATCTTGTGTTG
1 GTTCATCTTGTGCTG
*
103907 GTTCTTCTT
1 GTTCATCTT
103916 CAGAATAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.05, C:0.18, G:0.23, T:0.54
Consensus pattern (15 bp):
GTTCATCTTGTGCTG
Found at i:105994 original size:29 final size:29
Alignment explanation
Indices: 105954--106021 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
105944 CATTATACAC
*
105954 AAATAGCACCCTTTTTAAAATAATTACC-A
1 AAATAGCACCCTTTTCAAAATAATT-CCAA
* *
105983 AAATAGCACCCTTTTCGAATTAATTCCAA
1 AAATAGCACCCTTTTCAAAATAATTCCAA
106012 AAATAGCACC
1 AAATAGCACC
106022 AATTTCGAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 2 0.06
29 33 0.94
ACGTcount: A:0.43, C:0.24, G:0.06, T:0.28
Consensus pattern (29 bp):
AAATAGCACCCTTTTCAAAATAATTCCAA
Found at i:106027 original size:29 final size:28
Alignment explanation
Indices: 105974--106122 Score: 99
Period size: 29 Copynumber: 5.2 Consensus size: 28
105964 CTTTTTAAAA
**
105974 TAATTACCAAAATAGCACCCTTTTCGAAT
1 TAATT-CCAAAATAGCACCAATTTCGAAT
106003 TAATTCCAAAAATAGCACCAATTTCGAAT
1 TAATTCC-AAAATAGCACCAATTTCGAAT
* * *
106032 TAATTCCCAGAATATCA-C-TTTTCCGAA-
1 TAATT-CCAAAATAGCACCAATTT-CGAAT
* * *
106059 -AATTACCAAAATAACACCCATTTTGAAT
1 TAATT-CCAAAATAGCACCAATTTCGAAT
* * ***
106087 TAATTCCCAGAATATCACCAAAACCGAAT
1 TAATT-CCAAAATAGCACCAATTTCGAAT
106116 TAATTCC
1 TAATTCC
106123 CAGAATAACA
Statistics
Matches: 95, Mismatches: 18, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
26 13 0.14
27 7 0.07
28 12 0.13
29 61 0.64
30 2 0.02
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (28 bp):
TAATTCCAAAATAGCACCAATTTCGAAT
Found at i:106116 original size:84 final size:84
Alignment explanation
Indices: 105975--106129 Score: 231
Period size: 84 Copynumber: 1.8 Consensus size: 84
105965 TTTTTAAAAT
* ***
105975 AATTACCAAAATAGCACCCTTTTCGAATTAATTCCAAAAATAGCACCAATTTCGAATTAATTCCC
1 AATTACCAAAATAACACCCTTTTCGAATTAATTCCAAAAATAGCACCAAAACCGAATTAATTCCC
106040 AGAATATCACTTTTCCGAA
66 AGAATATCACTTTTCCGAA
* * *
106059 AATTACCAAAATAACACCCATTTT-GAATTAATTCCCAGAATATCACCAAAACCGAATTAATTCC
1 AATTACCAAAATAACACCC-TTTTCGAATTAATTCCAAAAATAGCACCAAAACCGAATTAATTCC
106123 CAGAATA
65 CAGAATA
106130 ACACCAGTCA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
84 59 0.94
85 4 0.06
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (84 bp):
AATTACCAAAATAACACCCTTTTCGAATTAATTCCAAAAATAGCACCAAAACCGAATTAATTCCC
AGAATATCACTTTTCCGAA
Found at i:106165 original size:18 final size:18
Alignment explanation
Indices: 106136--106187 Score: 88
Period size: 18 Copynumber: 2.9 Consensus size: 18
106126 AATAACACCA
106136 GTCAAC-GGTCGGGTCGG
1 GTCAACGGGTCGGGTCGG
*
106153 GTCAACGGGTCGGGTTGG
1 GTCAACGGGTCGGGTCGG
106171 GTCAACGGGTCGGGTCG
1 GTCAACGGGTCGGGTCG
106188 TGACCGGTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 6 0.19
18 26 0.81
ACGTcount: A:0.12, C:0.21, G:0.48, T:0.19
Consensus pattern (18 bp):
GTCAACGGGTCGGGTCGG
Found at i:112625 original size:29 final size:29
Alignment explanation
Indices: 112593--112704 Score: 120
Period size: 29 Copynumber: 3.9 Consensus size: 29
112583 CATTATACAC
*
112593 AAATAGCACCCTTTTCGAATTAATTCCCA
1 AAATAGCACCCATTTCGAATTAATTCCCA
*
112622 AAATAGCACCAATTTCGAATTAATTCCCA
1 AAATAGCACCCATTTCGAATTAATTCCCA
* * ** * * *
112651 GAATATCA-CTTTTTCGAA-AAAATACCA
1 AAATAGCACCCATTTCGAATTAATTCCCA
*
112678 AAATAGCACCCATTTCAAATTAATTCC
1 AAATAGCACCCATTTCGAATTAATTCC
112705 TAGAATATAA
Statistics
Matches: 64, Mismatches: 17, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
27 12 0.19
28 15 0.23
29 37 0.58
ACGTcount: A:0.40, C:0.24, G:0.06, T:0.29
Consensus pattern (29 bp):
AAATAGCACCCATTTCGAATTAATTCCCA
Found at i:112783 original size:18 final size:18
Alignment explanation
Indices: 112746--112798 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 18
112736 GAATAACACC
*
112746 GGTCAAC-GGTCGGGTCG
1 GGTCAACGGGTCGAGTCG
*
112763 GGTCAACGGGTCGAGTTG
1 GGTCAACGGGTCGAGTCG
*
112781 GGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGAGTCG
112799 TGACCGGTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
17 7 0.23
18 24 0.77
ACGTcount: A:0.13, C:0.21, G:0.47, T:0.19
Consensus pattern (18 bp):
GGTCAACGGGTCGAGTCG
Found at i:123859 original size:2 final size:2
Alignment explanation
Indices: 123854--123885 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
123844 ACACACACAC
123854 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
123886 CATGCCAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:129148 original size:24 final size:24
Alignment explanation
Indices: 129116--129194 Score: 149
Period size: 24 Copynumber: 3.3 Consensus size: 24
129106 TCGGAAAACC
129116 GAAGATTTTGAATCGAAAAGCTAA
1 GAAGATTTTGAATCGAAAAGCTAA
129140 GAAGATTTTGAATCGAAAAGCTAA
1 GAAGATTTTGAATCGAAAAGCTAA
*
129164 GAAGATTTTGAATCGAAAATCTAA
1 GAAGATTTTGAATCGAAAAGCTAA
129188 GAAGATT
1 GAAGATT
129195 ATCGTAGTCA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.46, C:0.08, G:0.20, T:0.27
Consensus pattern (24 bp):
GAAGATTTTGAATCGAAAAGCTAA
Found at i:132383 original size:32 final size:31
Alignment explanation
Indices: 132344--132431 Score: 81
Period size: 31 Copynumber: 2.8 Consensus size: 31
132334 ATCATTCTCG
*
132344 GGTAGGCCCTACGGCCCTAAGATGTGTTCTTA
1 GGTAGGCCCTACGGCCCTAAGATGT-ATCTTA
* * * *
132376 GGTAGG-CCTCACGGCCCCAAAATCTATCTTG
1 GGTAGGCCCT-ACGGCCCTAAGATGTATCTTA
*
132407 GGTAGGCTCT-CAGGCCCTAAGATGT
1 GGTAGGCCCTAC-GGCCCTAAGATGT
132432 TCCCTTAGGT
Statistics
Matches: 44, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
30 1 0.02
31 23 0.52
32 20 0.45
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (31 bp):
GGTAGGCCCTACGGCCCTAAGATGTATCTTA
Found at i:138195 original size:2 final size:2
Alignment explanation
Indices: 138188--138213 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
138178 ACCAAACCAA
138188 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
138214 TAAGTTCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:138643 original size:21 final size:21
Alignment explanation
Indices: 138619--138662 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
138609 CCAGAGGAGG
* *
138619 AGGAGGAGCGCGAGAAGAGCT
1 AGGAGCAGCGCGAGAAGAACT
* *
138640 AGGAGCAGCTCGTGAAGAACT
1 AGGAGCAGCGCGAGAAGAACT
138661 AG
1 AG
138663 CTCCCGGAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.16, G:0.41, T:0.09
Consensus pattern (21 bp):
AGGAGCAGCGCGAGAAGAACT
Found at i:140207 original size:44 final size:42
Alignment explanation
Indices: 140157--140251 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 42
140147 GGCCTTGTGC
* *
140157 ATCGATGCACATTCAAGGCGTGCATAGGTGCACCT-TTATGGTGT
1 ATCGATGCACATTCAAGG-ATGCATAGATGCA-CTGTTA-GGTGT
* *
140201 ATCGATGCACATTCAAGGATGTATCGATGCACTGTTAGGTGT
1 ATCGATGCACATTCAAGGATGCATAGATGCACTGTTAGGTGT
140243 ATCGATGCA
1 ATCGATGCA
140252 TTAAGCACAA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
42 16 0.35
43 12 0.26
44 18 0.39
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (42 bp):
ATCGATGCACATTCAAGGATGCATAGATGCACTGTTAGGTGT
Found at i:140245 original size:20 final size:21
Alignment explanation
Indices: 140157--140251 Score: 77
Period size: 21 Copynumber: 4.4 Consensus size: 21
140147 GGCCTTGTGC
*
140157 ATCGATGCACATTCAAGGCGTGC
1 ATCGATGCACATTCAA-G-GTGT
* * * * *
140180 ATAGGTGCACCTTTATGGTGT
1 ATCGATGCACATTCAAGGTGT
140201 ATCGATGCACATTCAAGGATGT
1 ATCGATGCACATTCAAGG-TGT
*
140223 ATCGATGCAC-TGT-TAGGTGT
1 ATCGATGCACAT-TCAAGGTGT
140243 ATCGATGCA
1 ATCGATGCA
140252 TTAAGCACAA
Statistics
Matches: 58, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
20 12 0.21
21 20 0.34
22 15 0.26
23 11 0.19
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (21 bp):
ATCGATGCACATTCAAGGTGT
Found at i:149025 original size:17 final size:18
Alignment explanation
Indices: 149003--149042 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
148993 TCTGGTCTTG
149003 TTGGGCCT-TCGGGTTAT
1 TTGGGCCTGTCGGGTTAT
*
149020 TTGGGCCTGTTGGGTTAT
1 TTGGGCCTGTCGGGTTAT
149038 TTGGG
1 TTGGG
149043 TCTGGATCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.05, C:0.12, G:0.40, T:0.42
Consensus pattern (18 bp):
TTGGGCCTGTCGGGTTAT
Found at i:149180 original size:12 final size:12
Alignment explanation
Indices: 149163--149188 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
149153 ATAATAATAC
149163 AATATAAATAAT
1 AATATAAATAAT
149175 AATATAAATAAT
1 AATATAAATAAT
149187 AA
1 AA
149189 CGGGACGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AATATAAATAAT
Found at i:149549 original size:54 final size:55
Alignment explanation
Indices: 149485--149617 Score: 216
Period size: 54 Copynumber: 2.5 Consensus size: 55
149475 GGATGACATT
149485 GTTCCTTCGTGATGAGGACGTCTAG-CCATCTTTAAAGAGATTTGAGATAACACA
1 GTTCCTTCGTGATGAGGACGTCTAGACCATCTTTAAAGAGATTTGAGATAACACA
* *
149539 GTTCCTTCGTGATGAGGACATCT-GACCATCTTTAAAGATATTTGAGATAACACA
1 GTTCCTTCGTGATGAGGACGTCTAGACCATCTTTAAAGAGATTTGAGATAACACA
* *
149593 ATTCCTTCGCGATGAGGACGTCTAG
1 GTTCCTTCGTGATGAGGACGTCTAG
149618 TTGTCTAAGG
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
53 1 0.01
54 70 0.97
55 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30
Consensus pattern (55 bp):
GTTCCTTCGTGATGAGGACGTCTAGACCATCTTTAAAGAGATTTGAGATAACACA
Found at i:149673 original size:191 final size:191
Alignment explanation
Indices: 149348--149944 Score: 806
Period size: 191 Copynumber: 3.1 Consensus size: 191
149338 GTATGACATT
* * * * *
149348 GTTCCTTCGTGATGAGGACGTATAACCAGCTTTAAAGATATTTGAGATAACTCAATTCCTTCGTG
1 GTTCCTTCGTGATGAGGACATCTGACCATCTTTAAAGATATTTGAGATAACACAATTCCTTCGTG
* * * ** * * * *** *
149413 ATGAGGACATATGGCTATCTAAAAATGATGTTG-CTCCTTTATGATGAGGAATTCGGATCAATGG
66 ATGAGGACGTCTGGTTATCTAAGGATGATG-TGACTCCTTCATGATGAGGAGTTCTGATTGGTAG
* * *
149477 ATGACATTGTTCCTTCGTGATGAGGACGTCTAGCCATCTTTAAAGAGATTTGAGATAACACA
130 ATGACATTGTTCCTTCGTGATGAGGACATCTAGCCATTTTTAAAGATATTTGAGATAACACA
*
149539 GTTCCTTCGTGATGAGGACATCTGACCATCTTTAAAGATATTTGAGATAACACAATTCCTTCGCG
1 GTTCCTTCGTGATGAGGACATCTGACCATCTTTAAAGATATTTGAGATAACACAATTCCTTCGTG
* *
149604 ATGAGGACGTCTAGTTGTCTAAGGATGATGTGACTCCTTCATGATGAGGAGTTCTGATTGGTAGA
66 ATGAGGACGTCTGGTTATCTAAGGATGATGTGACTCCTTCATGATGAGGAGTTCTGATTGGTAGA
* * *
149669 TGACATTGTTCCTTCGTGATGAGGTCATCTGGCCATTTTTGAAGATATTTGAGATAACACA
131 TGACATTGTTCCTTCGTGATGAGGACATCTAGCCATTTTTAAAGATATTTGAGATAACACA
* * * * *
149730 ATACCTTCGTGATGAGGACATCT-AGCCATCTTTAAAGATATCTGAGATAACACAGTTCCTTTGT
1 GTTCCTTCGTGATGAGGACATCTGA-CCATCTTTAAAGATATTTGAGATAACACAATTCCTTCGT
149794 GATGAGGACGTCTGGTTATCTAAGGATGATGTGACTCCTTCATGATGAGGAGTTCTGATTGGTAG
65 GATGAGGACGTCTGGTTATCTAAGGATGATGTGACTCCTTCATGATGAGGAGTTCTGATTGGTAG
* * *
149859 ATGACATTGTTCATTCGTGATGAGGACAT-TTGACAATTTTTAAAGATATTTGAGATAACAC-
130 ATGACATTGTTCCTTCGTGATGAGGACATCTAG-CCATTTTTAAAGATATTTGAGATAACACA
* *
149920 GATTCCTTCATGATGAGGACGTCTG
1 G-TTCCTTCGTGATGAGGACATCTG
149945 GTTGTCTAAG
Statistics
Matches: 358, Mismatches: 43, Indels: 9
0.87 0.10 0.02
Matches are distributed among these distances:
190 5 0.01
191 353 0.99
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (191 bp):
GTTCCTTCGTGATGAGGACATCTGACCATCTTTAAAGATATTTGAGATAACACAATTCCTTCGTG
ATGAGGACGTCTGGTTATCTAAGGATGATGTGACTCCTTCATGATGAGGAGTTCTGATTGGTAGA
TGACATTGTTCCTTCGTGATGAGGACATCTAGCCATTTTTAAAGATATTTGAGATAACACA
Found at i:149738 original size:54 final size:54
Alignment explanation
Indices: 149679--149802 Score: 176
Period size: 54 Copynumber: 2.3 Consensus size: 54
149669 TGACATTGTT
* * * * *
149679 CCTTCGTGATGAGGTCATCTGGCCATTTTTGAAGATATTTGAGATAACACAATA
1 CCTTCGTGATGAGGACATCTAGCCATCTTTAAAGATATCTGAGATAACACAATA
* *
149733 CCTTCGTGATGAGGACATCTAGCCATCTTTAAAGATATCTGAGATAACACAGTT
1 CCTTCGTGATGAGGACATCTAGCCATCTTTAAAGATATCTGAGATAACACAATA
*
149787 CCTTTGTGATGAGGAC
1 CCTTCGTGATGAGGAC
149803 GTCTGGTTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (54 bp):
CCTTCGTGATGAGGACATCTAGCCATCTTTAAAGATATCTGAGATAACACAATA
Found at i:151756 original size:2 final size:2
Alignment explanation
Indices: 151751--151789 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
151741 TATAGCAATC
151751 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A- AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
151790 TACATATGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
1 3 0.09
2 31 0.91
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:154152 original size:55 final size:54
Alignment explanation
Indices: 154066--154816 Score: 922
Period size: 55 Copynumber: 13.8 Consensus size: 54
154056 AAAAAAATTT
* * * * * *
154066 GCTCCCTACTGCTTCAGGGAGTATAAAACTCAAACAATCTTCATA-AAACAG-GTTC
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCA-ACAATC-GTG-TC
* * * *
154121 GTTCCCTATTCTTTCAGAGAGTATAGGACT----CAATCTTCAACAAACGTGTCC
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGT-C
* * * * *
154172 GCTCCCTATTCCTTCAGAGAGTATAGGACTTGAACAATCTTTAACAAACGTGTTT
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTG-TC
* * * * * *
154227 GCTCCCTATTCCTTTAGAGAGTATAGGACTTGAAAAACCTTCAACAAACGTGTC
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
* *
154281 TGGTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAACCTTCAACAATCGTGTCC
1 -GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGT-C
154337 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
* * * *
154391 TACTCCCTATTCCTTTAGAAAGTATAAGACTCTAACAATCTTCAACAATCGTGTC
1 -GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
* *
154446 TGCTCCCTATTCCTTCAGAGAGTATAAGGCTCGAACAATCTTCAACAATTGTGTC
1 -GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
* ** *
154501 TACTCTTTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCATGTCC
1 -GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGT-C
154557 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
* * * * *
154611 TGCTCTCTATTTCTTCAGAGAGTATAAGACTTGAACAATATTCTACAATCGTGTC
1 -GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
*
154666 TGCTCCCTATTCCTTCAGAGAGTATAAGACTCGAAAAATCTTCAACAATCGTGTC
1 -GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
* * * *
154721 TGTTCCCTATTTCTTCAGAGAGTATAAGACTCGAACAATTTTCAACAATCAT-TC
1 -GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
*
154775 TACTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTT
1 -GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTT
154817 GATGCTTCAA
Statistics
Matches: 619, Mismatches: 64, Indels: 27
0.87 0.09 0.04
Matches are distributed among these distances:
50 3 0.00
51 43 0.07
54 43 0.07
55 527 0.85
56 3 0.00
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (54 bp):
GCTCCCTATTCCTTCAGAGAGTATAAGACTCGAACAATCTTCAACAATCGTGTC
Found at i:159387 original size:8 final size:8
Alignment explanation
Indices: 159376--159409 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
159366 AGAAAAGAGG
*
159376 ATATATAT
1 ATATACAT
159384 ATATACAT
1 ATATACAT
159392 ATATACAT
1 ATATACAT
159400 ATATACAT
1 ATATACAT
159408 AT
1 AT
159410 GGGAGACTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (8 bp):
ATATACAT
Found at i:167772 original size:2 final size:2
Alignment explanation
Indices: 167765--167797 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
167755 TATACTTTAA
167765 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
167798 CGATATAGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:169443 original size:2 final size:2
Alignment explanation
Indices: 169438--169485 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
169428 ACACACACGC
169438 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
169480 AC AT AT
1 AT AT AT
169486 GCGATCACAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:181533 original size:17 final size:18
Alignment explanation
Indices: 181511--181551 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
181501 TCTGGTCTTG
*
181511 TTGGGCCTTC-GAGTTAT
1 TTGGGCCTGCTGAGTTAT
*
181528 TTGGGCCTGCTGGGTTAT
1 TTGGGCCTGCTGAGTTAT
181546 TTGGGC
1 TTGGGC
181552 ATGGATCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.07, C:0.17, G:0.37, T:0.39
Consensus pattern (18 bp):
TTGGGCCTGCTGAGTTAT
Found at i:181688 original size:12 final size:12
Alignment explanation
Indices: 181671--181696 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
181661 ATAACAATAC
181671 AATATAAATAAT
1 AATATAAATAAT
181683 AATATAAATAAT
1 AATATAAATAAT
181695 AA
1 AA
181697 CGGGATGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AATATAAATAAT
Found at i:183970 original size:301 final size:301
Alignment explanation
Indices: 183440--184011 Score: 831
Period size: 301 Copynumber: 1.9 Consensus size: 301
183430 TCAATAGTTT
* * * * *
183440 AAAGTTGTTTTATAACTAAAAATCTCACTGCATGTCATCTAGAGTCGGGAATATTTGATAAGCTT
1 AAAGTTATTTTATAACTAAAAATCTCACTGCAGGCCATCTAGAGTCAGGAATATTTGATAAGCTG
* *
183505 TCTAAATTGCAAGAATTAAGCTTGGAAGGGAACCAAATATCTGGTAGCATTCCCAGTAGTTTATA
66 TCTAAATTGCAAGAATTAAGCTTGGAAGGGAACCAAATATCTGGTAGCATTCCCAGCAGCTTATA
* *
183570 CAAGAGCAAAGAGTTGAGGTATTTATCATTGTGGAACAACTCTATGGAAGGAAGCATACCTATAG
131 CAAGAGCAAAGAGTTGAGGTATATATCATTGTGGAACAACACTATGGAAGGAAGCATACCTATAG
* * **
183635 AAATCGGAAATTTGACTATGCTCCAATATTTGTATATTGGTTACAACAATTTCAAAGGTAAAAAA
196 AAATCGGAAATTTGACTATGCTCCAATATTTGTATATTGCTCACAACAACATCAAAGGTAAAAAA
183700 TTCCTCATTTGCATTCCGTTATCTTTTATTTTCATTACATA
261 TTCCTCATTTGCATTCCGTTATCTTTTATTTTCATTACATA
* * **
183741 AAAGTTATTTTATAATTAACAATCTCACTGCAGGCCATCTTTAGTCAGGAATATTTGATAA-CAT
1 AAAGTTATTTTATAACTAAAAATCTCACTGCAGGCCATCTAGAGTCAGGAATATTTGATAAGC-T
* * ** * * * *
183805 GTCTAAATTGCAAGTATTAAGGTTGGTTGGGATCCAGATTTCTGGTATCATTCCCAGCAGCTTAT
65 GTCTAAATTGCAAGAATTAAGCTTGGAAGGGAACCAAATATCTGGTAGCATTCCCAGCAGCTTAT
* * *
183870 ACAAGTGCAAGGAGTTGAGGTATATATCATTGTGGAACAACACTATGGAAGGAAGTATACCTATA
130 ACAAGAGCAAAGAGTTGAGGTATATATCATTGTGGAACAACACTATGGAAGGAAGCATACCTATA
* * * * *
183935 GAAATTGGAAATTTGACTATGCTCCAATTTTTGTATCTTGCTCATAACAACATCAGAGGTAAAAA
195 GAAATCGGAAATTTGACTATGCTCCAATATTTGTATATTGCTCACAACAACATCAAAGGTAAAAA
184000 ATTCCTCATTTG
260 ATTCCTCATTTG
184012 TGTTTCGTTC
Statistics
Matches: 237, Mismatches: 33, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
300 1 0.00
301 236 1.00
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (301 bp):
AAAGTTATTTTATAACTAAAAATCTCACTGCAGGCCATCTAGAGTCAGGAATATTTGATAAGCTG
TCTAAATTGCAAGAATTAAGCTTGGAAGGGAACCAAATATCTGGTAGCATTCCCAGCAGCTTATA
CAAGAGCAAAGAGTTGAGGTATATATCATTGTGGAACAACACTATGGAAGGAAGCATACCTATAG
AAATCGGAAATTTGACTATGCTCCAATATTTGTATATTGCTCACAACAACATCAAAGGTAAAAAA
TTCCTCATTTGCATTCCGTTATCTTTTATTTTCATTACATA
Done.