Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006473.1 Hibiscus syriacus cultivar Beakdansim tig00015689_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58709

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3777--3889
54
2.1
54
95
3
201
40
25
14
19
1.89
8482--8542
21
2.7
23
82
10
81
37
21
4
36
1.75
8953--9015
23
2.7
23
85
0
81
38
15
4
41
1.69
8083--9354
471
2.7
476
94
2
2257
40
9
7
41
1.67
9354--9416
25
2.5
25
97
0
117
36
12
11
39
1.79
11526--12949
200
7.1
199
94
1
2491
30
18
14
35
1.91
11526--12949
399
3.6
400
96
1
2603
30
18
14
35
1.91
13056--13116
19
3.3
18
88
2
59
52
11
1
34
1.47
13068--13116
19
2.6
19
96
0
89
55
10
2
32
1.45
14908--14972
33
2.0
33
90
0
103
23
50
0
26
1.49
15010--15050
21
2.0
21
90
0
64
19
26
12
41
1.87
17081--17133
24
2.2
24
83
6
63
26
7
13
52
1.66
17245--17719
182
2.6
180
88
2
664
26
16
13
42
1.86
25556--25596
18
2.3
18
100
0
82
17
48
21
12
1.79
25535--25590
23
2.4
23
93
0
94
19
51
19
8
1.73
28027--28142
24
4.8
24
84
6
146
26
16
18
38
1.91
28027--28142
48
2.4
48
88
5
164
26
16
18
38
1.91
33870--34007
21
6.8
20
68
14
68
71
5
4
18
1.21
34079--34116
19
2.0
20
89
5
60
68
2
0
28
1.03
34090--34124
16
2.2
16
89
0
52
74
0
0
25
0.82
35208--35265
27
2.1
27
84
12
75
68
0
3
27
1.05
35228--35283
7
8.1
7
80
11
53
60
1
1
35
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36777--36809
16
2.0
17
94
5
59
78
0
18
3
0.87
37885--37926
5
8.4
5
82
10
50
80
2
0
16
0.81
37898--37954
7
7.6
7
76
20
53
78
0
1
19
0.83
37891--37936
12
3.8
12
83
13
58
80
0
0
19
0.71
37893--38059
20
8.1
20
67
17
90
74
2
4
17
1.11
37891--37956
9
7.0
9
74
20
55
77
0
1
21
0.85
37987--38054
21
3.3
20
79
8
66
75
1
4
19
1.06
38115--38171
3
19.7
3
75
13
57
68
1
0
29
1.00
38098--38171
26
2.8
25
78
11
78
67
2
1
28
1.12
38838--38925
41
2.1
41
93
0
149
12
10
27
50
1.72
38845--38913
21
3.3
20
68
22
54
11
8
26
53
1.65
39336--39375
3
13.3
3
84
10
55
65
2
0
32
1.06
39332--39375
16
2.7
17
86
10
65
65
2
0
31
1.05
39332--39370
19
2.1
19
95
0
69
66
2
0
30
1.05
39412--39673
37
7.2
37
77
12
220
44
7
2
45
1.43
42407--42562
35
4.6
35
65
20
98
45
7
4
42
1.53
42867--42911
21
2.3
19
84
7
54
44
8
4
42
1.56
42868--42911
19
2.2
21
84
8
56
45
9
4
40
1.56
43503--43547
16
2.8
16
87
12
74
26
13
31
28
1.94
48686--49090
200
2.0
200
94
1
715
42
22
11
23
1.85

Tables:   1

The End!