genome.fa.s6474.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006474.1 Hibiscus syriacus cultivar Beakdansim tig00015690_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104767

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1469--1588	19	6.8	19	70	21	100	45	20	23	11	1.83
1494--1588	33	2.9	33	95	1	165	43	22	24	10	1.84
1589--1636	20	2.5	19	80	12	62	14	16	22	45	1.84
2151--2262	20	5.6	20	81	4	127	22	20	19	37	1.94
2169--2276	41	2.7	40	82	1	126	24	20	17	37	1.93
2142--2386	40	6.1	40	72	13	144	27	18	19	34	1.95
2174--2322	20	7.4	20	79	4	86	28	19	20	32	1.97
2377--2425	21	2.3	22	79	6	66	36	16	26	20	1.93
2701--2774	29	2.6	28	81	10	80	48	1	2	47	1.24
11077--11200	60	2.1	60	83	6	153	38	12	9	38	1.77
11640--11768	41	3.1	41	79	2	152	33	20	18	27	1.96
11661--11768	20	5.3	20	80	6	119	36	20	19	24	1.95
11618--11753	21	6.6	21	77	9	118	31	22	18	27	1.97
11738--11778	20	2.0	20	85	0	55	34	19	21	24	1.97
11599--11817	82	2.7	80	76	13	221	31	22	17	28	1.97
12628--12681	24	2.2	24	93	0	90	20	18	20	40	1.91
15087--15180	20	4.7	20	86	2	136	35	24	21	19	1.96
15087--15180	40	2.3	40	90	3	154	35	24	21	19	1.96
15185--15272	19	4.8	19	80	16	114	45	18	21	14	1.85
15132--15272	53	2.7	52	87	3	192	41	19	22	15	1.89
15282--15350	33	2.1	33	83	0	84	13	20	23	43	1.86
15444--15480	14	2.6	14	86	0	56	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16867--16936	21	3.3	21	76	7	88	18	15	42	22	1.88
16855--16960	42	2.5	42	96	0	194	19	16	42	21	1.89
16882--16957	21	3.6	21	77	7	91	19	14	43	22	1.87
16836--16960	42	3.0	41	91	2	169	20	17	40	21	1.91
17469--17535	20	3.3	20	91	0	107	35	20	19	23	1.95
17582--17691	20	5.5	20	97	0	202	21	19	20	38	1.94
17544--17691	40	3.9	40	86	7	202	20	20	20	39	1.93
17544--17691	60	2.6	56	87	7	194	20	20	20	39	1.93
19564--19631	20	3.4	20	87	0	82	44	25	14	16	1.85
19675--19724	20	2.5	20	83	3	64	20	20	24	36	1.95
20314--20407	20	4.7	20	81	2	116	20	20	21	38	1.94
20314--20407	41	2.3	40	83	1	116	20	20	21	38	1.94
20881--20929	2	24.5	2	100	0	98	48	0	0	51	1.00
22809--22877	19	3.7	18	81	9	84	15	28	27	27	1.96
22809--22877	9	7.3	9	80	8	75	15	28	27	27	1.96
22873--22911	17	2.3	17	100	0	78	17	46	23	12	1.83
29195--29315	60	2.0	60	95	1	217	23	20	13	42	1.87
31796--31828	14	2.3	15	89	5	50	39	6	6	48	1.53
33162--33222	30	2.1	29	87	3	86	57	6	8	27	1.53
33190--33227	20	1.9	20	84	10	51	52	5	7	34	1.53
33322--33348	2	13.5	2	100	0	54	51	0	0	48	1.00
35868--35898	11	2.8	11	100	0	62	9	16	6	67	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35905--35935	15	2.1	15	93	0	53	22	16	6	54	1.64
43327--44433	282	3.9	282	87	3	1503	37	12	15	34	1.85
44265--44608	172	2.0	172	99	0	679	40	10	18	30	1.84
51348--51377	11	2.7	11	94	0	51	0	70	0	30	0.88
51371--51432	6	11.3	6	80	19	82	0	64	0	35	0.94
51359--51432	27	2.7	26	91	4	85	0	64	0	35	0.94
51372--51432	21	2.9	21	90	9	90	0	63	0	36	0.94
73891--73956	21	3.1	21	80	0	69	48	27	0	24	1.51
74958--74985	2	14.0	2	100	0	56	50	0	0	50	1.00
75342--75377	2	18.5	2	94	5	65	50	0	0	50	1.00
84377--84454	29	2.7	29	100	0	156	34	17	16	30	1.93
88705--88746	3	14.3	3	90	5	68	0	28	0	71	0.86
90226--90311	7	12.3	7	70	14	52	43	27	0	29	1.56
90218--90311	14	6.6	14	80	1	71	43	28	0	27	1.55
90498--90596	25	4.2	24	80	14	102	40	3	1	55	1.22
90540--90581	12	3.4	12	75	18	50	40	2	0	57	1.12
93849--94135	118	2.4	120	85	4	375	45	7	15	31	1.75
94798--94836	20	2.0	20	84	0	51	33	10	33	23	1.88
96942--96978	19	1.9	19	88	0	56	64	5	21	8	1.40
99329--99362	16	2.1	17	88	5	52	35	0	0	64	0.94
103072--103101	2	15.0	2	100	0	60	0	50	0	50	1.00
103101--103125	2	12.5	2	100	0	50	48	0	0	52	1.00

Tables:   1

The End!