Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006476.1 Hibiscus syriacus cultivar Beakdansim tig00015698_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116801

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2681--2778
36
2.7
36
95
0
169
19
24
20
35
1.95
4434--4467
17
1.9
18
88
5
52
20
20
20
38
1.94
5645--5723
36
2.2
36
81
4
97
20
51
11
16
1.74
6325--6405
31
2.7
31
77
7
78
35
13
7
43
1.72
14515--14546
15
2.0
17
88
11
50
68
0
3
28
1.04
15790--15838
22
2.2
23
89
7
75
38
10
0
51
1.36
20853--20893
21
1.9
22
95
5
75
51
0
4
43
1.23
21479--21632
59
2.6
59
90
1
227
40
16
12
30
1.86
22397--23367
492
2.0
493
97
0
1827
25
17
24
32
1.97
24246--24365
60
2.0
61
91
3
197
30
20
15
34
1.93
27735--27808
31
2.4
32
86
6
107
41
14
9
33
1.79
32655--32763
26
4.3
25
68
15
80
44
0
0
54
1.06
33367--33406
12
3.2
12
85
7
53
60
0
2
37
1.11
33447--33487
19
2.2
19
86
0
55
56
0
0
43
0.99
36806--36853
21
2.3
20
80
16
53
56
22
0
20
1.43
40744--40790
24
2.0
24
91
0
76
46
0
0
53
1.00
42551--42586
17
2.2
17
90
5
56
25
5
2
66
1.27
50188--50221
3
11.0
3
93
6
59
64
0
0
35
0.94
50220--50266
3
15.7
3
90
0
67
36
0
0
63
0.94
50214--50257
21
2.1
21
100
0
88
43
0
0
56
0.99
52089--52117
12
2.3
13
94
5
51
31
3
6
58
1.41
56001--56058
21
2.9
21
84
5
75
32
25
18
22
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69955--70076
51
2.4
51
90
0
190
29
31
13
26
1.93
71753--72072
107
3.0
106
91
3
498
40
9
14
35
1.78
73771--73926
60
2.6
60
78
5
172
32
21
4
41
1.73
84870--84905
2
18.0
2
100
0
72
50
0
0
50
1.00
89231--89278
25
2.0
24
88
8
71
47
0
6
45
1.27
89870--89942
24
3.0
24
97
0
137
39
0
16
43
1.48
92750--92802
28
1.9
27
84
3
70
33
9
15
41
1.79
94459--94492
11
3.1
11
95
0
59
32
0
0
67
0.91
107952--108015
23
2.7
24
78
9
78
45
3
0
51
1.17
107965--108045
32
2.5
32
78
11
85
49
2
0
48
1.14
108021--108149
65
2.0
65
93
3
224
62
2
0
34
1.14
108028--108135
21
5.0
21
65
21
53
62
2
0
34
1.16
108021--108131
24
4.9
24
67
21
62
61
2
0
35
1.17
108137--108168
9
3.4
9
95
4
55
65
0
3
31
1.08
111390--111925
277
1.9
278
96
0
984
45
19
17
17
1.86

Tables:   1

The End!