genome.fa.s6477.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006477.1 Hibiscus syriacus cultivar Beakdansim tig00015699_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91097

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4400--4429	15	1.9	16	93	6	53	26	16	23	33	1.96
8570--8642	21	3.5	21	94	0	101	32	27	20	19	1.97
18918--18944	3	9.0	3	100	0	54	66	0	0	33	0.92
19333--19366	16	2.1	16	88	0	50	50	0	2	47	1.16
19408--19441	16	2.0	18	88	11	54	26	2	5	64	1.30
19910--20155	128	1.9	129	89	1	386	35	12	15	36	1.85
20552--20627	35	2.2	35	92	0	125	35	1	23	39	1.63
21095--21198	54	1.9	54	92	0	172	29	18	12	39	1.87
23902--23963	30	2.1	29	82	8	72	45	6	17	30	1.74
25158--25206	24	2.0	24	96	0	89	34	12	10	42	1.76
27188--27259	21	3.5	20	74	12	65	56	1	1	40	1.16
27188--27261	19	3.6	21	75	13	73	56	1	1	40	1.16
34230--34258	15	1.9	15	100	0	58	48	6	3	41	1.47
34408--34442	15	2.3	15	85	0	52	54	5	0	40	1.24
34767--34842	17	4.6	17	74	8	59	25	14	1	59	1.43
34786--34842	17	3.4	17	80	4	62	24	15	0	59	1.36
36575--36622	21	2.3	21	100	0	96	45	18	6	29	1.74
39341--39397	20	2.8	20	86	7	71	26	0	31	42	1.56
40848--40882	16	2.2	16	90	5	54	54	14	2	28	1.54
41832--42034	60	3.3	61	77	14	227	36	16	23	23	1.94
41831--42034	95	2.2	95	82	7	260	36	16	23	23	1.94
41831--42047	30	7.1	30	78	8	204	36	16	23	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42610--42662	23	2.3	23	90	0	79	33	16	30	18	1.94
45507--45717	60	3.5	59	79	5	176	36	17	20	26	1.94
45544--45722	30	6.0	30	77	3	173	34	16	21	27	1.95
45545--45726	60	3.0	60	80	4	199	35	15	21	26	1.94
54944--55051	21	5.2	21	61	20	57	18	23	29	28	1.98
54952--55194	41	5.9	41	96	0	414	21	24	24	30	1.99
54979--55132	21	7.6	20	66	21	70	20	24	27	28	1.99
55955--55979	5	5.0	5	100	0	50	0	60	20	20	1.37
56155--56265	20	5.4	20	68	19	77	32	25	21	20	1.98
56131--56282	41	3.6	41	94	2	241	29	28	20	21	1.98
56110--56282	21	8.2	21	68	21	112	28	29	20	21	1.98
56666--56713	18	2.8	17	90	6	71	29	29	6	35	1.82
68497--68521	2	12.5	2	100	0	50	52	0	0	48	1.00
68521--68547	2	13.5	2	100	0	54	51	0	48	0	1.00
72818--72853	2	18.0	2	100	0	72	50	0	0	50	1.00
74694--74730	19	1.9	19	88	0	56	8	21	5	64	1.40
77540--77828	118	2.4	118	84	4	357	31	15	7	45	1.74
81063--81103	20	2.1	20	90	4	66	60	0	0	39	0.96
81104--81162	23	2.5	23	86	8	75	52	1	5	40	1.33
81058--81162	24	4.3	24	76	15	83	55	1	2	40	1.26
81398--81450	15	3.9	14	82	12	65	20	0	32	47	1.51
82913--82954	3	14.3	3	90	5	68	71	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87154--87231	29	2.7	29	100	0	156	30	16	17	34	1.93

Tables:   1

The End!