genome.fa.s6478.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006478.1 Hibiscus syriacus cultivar Beakdansim tig00015700_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120918

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2975--3014	12	3.3	12	78	0	53	30	37	2	30	1.71
14613--14717	45	2.4	45	96	1	194	58	8	11	21	1.60
28089--28233	75	1.9	75	88	5	222	33	12	20	34	1.90
29768--29794	6	4.5	6	100	0	54	0	0	51	48	1.00
30612--30709	21	4.6	21	80	12	119	26	35	23	14	1.93
30618--30709	43	2.2	41	88	9	132	26	36	22	14	1.92
36430--36511	23	3.7	23	72	9	89	24	26	18	30	1.98
36458--36527	20	3.3	20	71	11	59	22	30	22	24	1.99
36434--36527	43	2.2	43	84	0	125	23	28	21	26	1.99
38560--38590	14	2.2	14	94	0	53	22	0	9	67	1.19
39236--39294	21	2.8	19	78	16	64	27	35	20	16	1.94
41969--42115	75	2.0	75	91	0	240	31	14	21	32	1.93
44298--44352	20	2.8	20	100	0	110	34	20	14	30	1.92
46657--46718	32	1.9	32	83	6	81	64	11	0	24	1.26
48689--48803	5	22.8	5	74	11	92	72	1	5	20	1.14
48748--48814	21	3.0	22	80	6	73	73	2	8	14	1.20
48823--49663	444	1.9	448	87	3	1255	26	21	26	26	1.99
50168--50219	18	2.9	18	79	0	59	73	0	1	25	0.94
50169--50240	15	4.6	15	72	10	56	70	0	2	26	1.00
50169--50225	18	3.2	18	75	5	53	71	0	1	26	0.95
54693--54828	59	2.3	60	84	7	179	35	14	16	33	1.90
55900--55946	22	2.0	22	88	8	67	74	0	6	19	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56102--56137	2	18.0	2	100	0	72	50	0	0	50	1.00
56295--56437	59	2.4	59	81	9	175	35	13	17	32	1.89
57522--57557	11	3.3	11	84	0	54	80	0	5	13	0.88
57522--57612	22	4.0	22	74	19	78	74	1	4	19	1.05
57576--57714	48	3.0	47	79	16	157	65	2	2	29	1.19
57614--57704	40	2.3	39	83	12	114	64	4	2	28	1.24
57694--57719	2	13.0	2	100	0	52	50	0	0	50	1.00
58093--58204	37	3.0	37	92	2	181	32	14	13	40	1.84
60397--60433	16	2.3	16	95	0	65	51	5	24	18	1.67
61135--61212	16	5.1	15	73	21	56	3	11	3	80	0.97
61144--61206	14	4.8	13	75	15	58	4	11	3	80	0.97
61148--61207	22	2.6	23	79	12	70	5	11	3	80	1.00
61136--61212	31	2.5	30	82	12	86	3	11	3	80	0.98
61148--61212	24	2.8	22	76	15	60	4	10	4	80	1.01
64099--64199	8	12.5	8	72	10	62	62	1	1	33	1.18
64100--64146	20	2.3	21	78	10	53	65	4	2	27	1.22
64140--64194	2	28.0	2	83	3	58	58	0	1	40	1.09
64782--64883	35	2.9	35	94	2	168	31	12	15	40	1.85
67706--67755	24	2.1	24	84	0	64	46	22	12	20	1.83
67716--67803	24	3.7	24	81	6	97	38	20	18	22	1.93
67723--67814	48	1.9	48	84	4	123	40	17	18	23	1.91
72252--72308	13	4.5	12	74	20	53	3	14	5	77	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75339--75505	4	41.0	4	71	15	76	71	2	6	19	1.20
75453--75495	17	2.5	17	81	7	52	74	2	4	18	1.10
75339--75504	21	8.1	20	69	16	74	71	2	6	19	1.19
75511--75540	2	15.0	2	100	0	60	50	0	0	50	1.00
75971--76078	37	2.9	37	88	0	162	34	10	12	42	1.77
76887--77034	72	2.1	72	100	0	296	36	18	10	34	1.85
83323--83396	37	2.0	36	84	7	96	47	2	0	50	1.15
88686--88715	14	2.1	14	93	0	51	20	16	23	40	1.91
90451--90525	21	3.6	21	67	13	55	28	14	17	40	1.89
96417--96450	17	2.1	16	88	5	50	47	0	0	52	1.00
97734--97771	20	1.9	20	88	0	58	42	0	21	36	1.53
100531--100597	20	3.3	20	89	4	73	32	20	19	26	1.97
100527--100664	40	3.5	40	82	2	152	28	21	21	27	1.99
100551--100664	20	5.7	20	86	0	138	27	22	21	28	1.99
100758--100828	27	2.6	27	93	0	115	43	33	4	18	1.69
100866--100908	22	2.0	22	95	0	77	23	41	16	18	1.89
101295--101381	20	4.5	19	75	7	68	14	13	21	49	1.79
101346--101388	20	2.2	20	86	0	59	11	16	20	51	1.75
103401--103485	20	4.3	20	88	2	111	18	18	24	37	1.94
103977--104079	21	4.9	21	74	2	73	22	35	19	22	1.96
105482--105543	14	4.3	14	77	6	61	38	0	14	46	1.45
105657--105695	20	2.0	20	89	0	60	51	23	17	7	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105738--105962	20	11.9	20	77	11	222	25	18	22	33	1.96
105758--105962	54	3.7	54	83	3	239	25	17	22	34	1.96
108174--108210	14	2.6	14	91	4	56	5	21	21	51	1.68
108388--108441	24	2.2	24	90	0	81	42	20	16	20	1.89
109195--109241	20	2.3	20	88	0	67	25	21	27	25	1.99
109226--109302	20	3.8	20	98	0	145	25	20	15	37	1.92
109211--109303	40	2.3	41	88	5	145	24	20	18	36	1.95

Tables:   1

The End!