Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006479.1 Hibiscus syriacus cultivar Beakdansim tig00015704_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99910

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4545--4620
29
2.6
29
85
4
100
42
18
5
34
1.73
4628--4689
21
2.9
21
82
2
79
14
22
45
17
1.85
7925--8016
46
2.0
47
85
8
125
34
20
10
33
1.88
10248--10287
9
4.3
9
90
6
62
12
30
30
27
1.93
10284--10326
22
2.0
22
100
0
86
18
48
23
9
1.76
10316--10347
7
4.6
7
100
0
64
15
31
28
25
1.96
17659--17703
22
2.0
22
100
0
90
17
51
22
8
1.73
20077--20142
33
2.0
33
96
0
123
46
18
4
30
1.68
23833--23857
11
2.3
11
100
0
50
16
8
0
76
1.02
29995--30027
9
3.8
9
88
8
50
63
0
0
36
0.95
30006--30050
11
4.4
10
81
13
56
57
4
0
37
1.19
41755--41797
17
2.6
16
88
7
59
23
9
0
67
1.19
43784--43827
23
1.9
23
85
0
61
50
13
22
13
1.77
48692--48730
2
19.5
2
100
0
78
48
0
0
51
1.00
52330--52441
2
56.5
2
81
11
115
41
4
1
51
1.32
55188--55220
2
16.5
2
100
0
66
48
0
0
51
1.00
60427--60463
2
18.5
2
100
0
74
48
0
0
51
1.00
63943--64064
61
2.0
63
82
9
153
15
26
29
28
1.96
67102--67169
16
4.5
15
75
14
59
70
8
19
1
1.21
67765--67819
22
2.5
22
100
0
110
36
27
12
23
1.91
68724--68798
13
5.3
13
79
17
87
17
46
22
13
1.82
68720--68792
18
4.6
18
77
22
83
17
49
21
10
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68737--68798
31
2.0
32
93
3
108
17
46
22
12
1.82
70093--70127
18
1.9
18
88
0
52
57
0
14
28
1.38
73193--73296
36
2.9
36
72
4
93
29
14
12
43
1.82
73276--73359
38
2.2
37
83
6
98
30
19
11
38
1.88
73406--73528
36
3.4
36
89
4
185
25
20
13
40
1.89
73447--73508
21
3.2
21
63
25
55
25
22
12
38
1.90
73733--74046
174
1.9
165
81
9
375
34
24
18
22
1.96
73944--74166
106
2.1
106
90
0
347
35
24
19
20
1.95
80750--80815
33
2.0
33
93
0
114
46
16
4
31
1.67
82749--82891
41
3.5
42
79
8
141
32
21
20
25
1.98
82824--83537
231
3.1
231
95
0
1248
33
18
16
31
1.93
86908--87006
29
3.4
29
88
1
135
44
18
6
31
1.74
94037--94105
29
2.3
30
90
2
104
43
18
5
31
1.74
94113--94174
21
2.9
21
82
2
79
14
22
45
17
1.85
97413--97504
46
2.0
47
85
8
125
34
20
10
33
1.88
99753--99793
21
2.0
21
100
0
82
19
51
19
9
1.74
99746--99781
16
2.1
18
90
10
58
16
52
19
11
1.73

Tables:   1

The End!