genome.fa.s648.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000648.1 Hibiscus syriacus cultivar Beakdansim tig00001254_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53905

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602--659	27	2.1	27	96	0	107	22	20	24	32	1.98
8383--8484	54	1.9	53	84	6	134	30	11	23	34	1.91
12396--12685	45	6.5	45	94	0	492	31	22	6	40	1.79
12759--12838	40	2.0	40	85	0	106	25	25	22	27	2.00
12866--12931	33	2.0	33	82	5	80	27	30	10	31	1.90
16891--17046	31	5.0	31	94	1	260	37	22	19	20	1.94
17728--17785	20	2.7	22	78	13	75	20	29	22	27	1.99
21416--21538	31	4.0	31	88	5	178	38	21	18	21	1.94
21429--21539	31	3.6	31	91	2	179	39	21	18	19	1.92
22200--22259	20	2.9	21	90	7	95	18	26	25	30	1.98
23198--23272	15	4.9	14	75	18	62	2	14	2	80	0.94
23200--23263	12	5.4	12	72	12	53	1	15	3	79	0.93
23183--23273	35	2.5	35	81	10	96	4	16	2	76	1.04
25991--26385	45	8.8	45	92	0	614	31	20	6	42	1.76
26065--26138	24	3.2	24	68	24	68	32	16	2	48	1.60
27477--27542	29	2.2	29	81	2	78	39	19	6	34	1.77
29406--29452	21	2.2	21	84	0	58	25	12	25	36	1.92
29455--29534	22	3.6	22	73	17	76	22	26	25	26	2.00
29669--29716	21	2.3	21	82	7	53	22	12	31	33	1.91
29316--29843	263	2.0	263	97	0	993	29	17	23	30	1.97
30944--31196	73	3.5	73	87	0	362	35	24	15	24	1.94
31741--31939	37	5.4	37	77	15	159	42	4	12	40	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31909--31954	20	2.2	20	88	11	65	41	4	10	43	1.59
31909--31964	21	2.5	22	83	13	71	42	5	10	41	1.62
32043--32980	5	189.8	5	97	2	1556	20	2	17	59	1.49
36374--36431	21	2.8	20	81	5	71	20	17	27	34	1.95
39763--39804	22	1.9	22	95	0	75	23	23	28	23	2.00
40888--40952	24	2.8	22	78	15	60	47	1	0	50	1.10

Tables:   1

The End!