genome.fa.s6481.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006481.1 Hibiscus syriacus cultivar Beakdansim tig00015717_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111668

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28--53	2	13.0	2	100	0	52	50	0	0	50	1.00
1978--2341	120	3.0	120	92	0	577	16	29	13	39	1.87
1994--2342	60	5.8	60	85	3	479	16	30	12	39	1.86
3306--3508	67	3.0	67	98	0	388	42	14	10	32	1.80
3774--3815	17	2.5	17	85	11	59	71	4	4	19	1.22
8113--8149	19	1.9	19	94	0	65	32	29	16	21	1.95
8256--8403	20	7.3	20	83	8	201	28	28	20	22	1.99
8296--8370	21	3.6	21	80	10	100	32	26	21	20	1.97
8256--8403	61	2.4	61	87	6	203	28	28	20	22	1.99
8276--8390	41	2.8	41	98	0	221	29	27	20	21	1.98
11477--11511	18	1.9	18	94	0	61	54	25	2	17	1.57
11682--11926	20	12.9	20	74	10	199	37	21	17	24	1.94
11690--11832	74	1.9	74	92	0	241	38	23	16	22	1.93
11682--11926	94	2.6	94	88	0	346	37	21	17	24	1.94
11784--11965	74	2.5	73	83	3	229	36	20	19	23	1.95
11824--11958	34	3.8	34	73	11	117	37	20	19	23	1.95
13475--13570	21	4.6	21	78	0	102	23	19	35	20	1.96
13491--13570	42	1.9	42	86	0	115	23	17	37	21	1.94
14039--14106	20	3.4	20	93	0	118	44	26	14	14	1.84
14112--14178	19	3.8	19	67	18	63	43	22	20	13	1.87
14099--14173	33	2.3	33	100	0	150	38	22	24	14	1.92
14252--14323	20	3.6	20	86	0	108	16	20	23	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16212--16262	20	2.5	20	87	0	66	52	19	11	15	1.73
16679--16751	22	3.3	21	80	3	83	27	15	36	20	1.92
16960--17005	21	2.1	21	88	4	65	36	17	17	28	1.92
17051--17087	19	1.9	19	88	0	56	21	18	27	32	1.97
17671--17723	19	2.8	19	97	0	97	52	0	0	47	1.00
18044--18080	2	18.5	2	94	0	65	45	2	0	51	1.15
20228--20351	59	2.1	60	80	10	139	32	17	18	31	1.94
23615--23639	13	1.9	13	100	0	50	68	0	0	32	0.90
23615--23658	19	2.3	19	88	0	61	61	0	2	36	1.09
30954--31157	65	3.2	65	83	6	211	29	16	22	30	1.96
33812--33889	21	3.5	22	78	8	77	28	21	24	25	1.99
39700--39859	65	2.5	65	83	5	200	28	16	23	31	1.96
39872--39921	20	2.5	20	100	0	100	18	16	36	30	1.92
44349--44415	34	2.0	34	90	0	107	43	4	16	35	1.68
45581--45656	20	3.5	21	76	8	82	43	1	1	53	1.17
45583--45656	21	3.6	20	75	12	78	43	1	1	54	1.17
49348--49427	3	25.3	3	85	9	79	57	2	1	38	1.20
49343--49397	16	3.5	15	87	2	65	61	1	3	32	1.24
49348--49394	19	2.5	19	92	0	76	61	2	2	34	1.20
49360--49427	22	3.1	22	84	0	91	57	1	0	41	1.08
55084--55116	16	2.0	17	88	5	50	27	0	6	66	1.15
61519--61611	8	11.5	8	73	19	68	77	1	13	7	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61519--61611	34	2.8	33	75	13	84	77	1	13	7	1.03
61515--61619	41	2.6	40	81	11	108	77	0	15	6	1.03
61517--61597	17	4.7	17	79	11	85	77	1	14	6	1.02
62486--62820	130	2.5	132	85	6	446	35	15	21	26	1.94
62771--62823	15	3.0	18	72	22	58	45	7	18	28	1.77
76026--76057	16	1.9	17	93	6	57	40	0	37	21	1.54
76563--76606	22	2.0	23	81	4	54	27	6	9	56	1.55
80996--81029	17	2.0	17	88	0	50	50	20	5	23	1.70
86265--86449	60	3.1	60	91	1	282	26	17	21	34	1.95
86327--86430	31	3.4	31	63	10	79	22	19	23	35	1.96
88729--88779	21	2.4	21	96	0	93	29	7	23	39	1.83
91007--91159	58	2.6	58	85	3	191	33	12	16	36	1.87
91007--91173	59	2.8	59	82	4	185	36	13	16	34	1.87
98027--98055	2	14.5	2	100	0	58	48	0	0	51	1.00
99633--99670	14	2.8	14	88	4	60	63	7	0	28	1.23
100774--100936	29	5.6	29	86	5	186	33	4	12	48	1.63
100779--100918	29	4.8	29	89	6	194	35	4	10	50	1.55
100779--100918	57	2.4	58	89	4	212	35	4	10	50	1.55
103355--103832	236	2.0	237	96	2	877	34	12	9	43	1.75
107297--107331	18	2.1	16	89	10	52	57	0	0	42	0.99
107315--107428	56	2.1	55	91	3	185	51	10	3	34	1.53
109936--109998	24	2.7	23	73	4	63	61	7	12	17	1.54

Tables:   1

The End!