genome.fa.s6482.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006482.1 Hibiscus syriacus cultivar Beakdansim tig00015730_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91703

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69--353	37	8.1	36	77	11	272	40	13	19	27	1.89
104--288	102	1.8	101	88	3	282	39	13	20	27	1.89
219--372	36	4.4	35	83	8	188	40	12	17	29	1.86
206--353	68	2.1	72	87	8	216	39	12	18	30	1.87
852--931	41	2.0	41	82	9	101	23	21	30	25	1.99
6306--6408	35	2.8	36	86	4	127	39	12	9	37	1.76
6315--6408	37	2.6	35	88	3	125	41	13	7	37	1.73
13302--13328	3	9.0	3	100	0	54	66	0	33	0	0.92
17154--17215	20	3.2	20	68	19	58	16	24	9	50	1.75
17152--17258	39	2.7	39	95	1	187	17	25	11	45	1.81
17437--17769	122	2.7	122	88	5	501	25	18	15	41	1.89
18261--18301	21	1.9	22	85	14	59	53	4	12	29	1.58
18654--18716	20	3.2	18	79	18	63	1	19	0	79	0.82
18665--18716	10	5.1	10	86	13	63	0	21	0	78	0.74
24511--24564	28	1.9	28	100	0	108	11	25	3	59	1.48
27551--27582	16	1.9	17	93	6	57	37	18	0	43	1.51
33753--33792	14	2.6	16	75	25	50	52	10	7	30	1.62
37655--37705	19	2.7	19	85	8	61	72	0	1	25	0.95
37777--37948	37	4.6	37	81	9	190	44	9	4	41	1.56
37914--37973	24	2.5	24	91	5	95	41	11	5	41	1.63
37839--38045	99	2.1	97	85	8	269	40	10	5	43	1.62
37876--38011	62	2.2	61	93	2	229	41	11	5	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37938--38067	37	3.5	38	78	13	155	40	10	5	44	1.61
37938--38069	36	3.6	35	79	14	151	40	9	5	44	1.60
38779--39558	201	3.9	200	80	2	778	28	19	17	33	1.95
45350--45403	5	10.0	5	78	21	56	77	0	5	16	0.94
45350--45390	11	3.7	11	90	9	66	80	0	2	17	0.82
45350--45403	16	3.3	16	89	2	72	77	0	5	16	0.94
60411--60449	14	2.9	14	88	3	62	79	0	5	15	0.90
60471--60504	16	2.1	17	94	5	61	76	0	5	17	0.98
61174--61211	17	2.2	18	85	4	51	2	18	26	52	1.58
61649--61675	2	13.5	2	100	0	54	51	0	0	48	1.00
61792--61848	24	2.4	24	91	2	89	42	7	5	45	1.53
61764--61885	62	2.0	61	84	7	158	40	10	5	42	1.63
61814--61980	37	4.5	38	76	12	175	40	10	5	44	1.61
61810--61980	74	2.3	72	89	7	254	40	9	5	44	1.60
61810--61980	38	4.6	36	72	15	125	40	9	5	44	1.60
65928--65978	3	17.0	3	88	8	68	70	1	0	27	0.98
65907--65978	21	3.2	23	79	18	73	72	2	0	25	0.98
65905--66001	9	10.8	8	78	13	50	70	3	0	26	1.02
65999--66320	36	8.8	36	75	15	218	44	7	3	45	1.47
66105--66161	19	3.1	19	72	10	64	49	3	0	47	1.18
65993--66319	73	4.5	71	75	14	249	44	7	3	45	1.47
66133--66334	38	5.3	38	76	14	138	44	7	2	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66351--66377	5	5.4	5	100	0	54	81	0	0	18	0.69
66932--67110	85	2.1	85	86	2	243	27	15	18	37	1.92
67037--67180	70	2.1	70	89	0	216	23	14	20	40	1.90
67107--67400	85	3.5	84	86	1	376	27	15	18	38	1.91
72699--72782	18	4.7	18	92	1	125	29	17	19	33	1.95
72777--72847	19	3.7	19	98	0	133	28	30	19	21	1.97
73435--73472	16	2.4	16	95	0	67	28	10	39	21	1.86
79479--79686	65	3.2	64	80	13	221	31	24	18	26	1.97
87855--87970	29	4.1	28	73	17	80	39	0	1	57	1.15
88070--88131	21	2.9	20	75	25	56	50	0	1	48	1.10
89111--89148	18	2.1	19	90	5	60	36	15	34	13	1.87
89267--89299	15	2.2	15	89	10	50	21	0	18	60	1.36
91177--91224	26	1.9	24	87	8	69	60	0	4	35	1.16
91153--91232	26	3.1	24	75	17	63	65	0	2	32	1.06

Tables:   1

The End!