genome.fa.s6483.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006483.1 Hibiscus syriacus cultivar Beakdansim tig00015742_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67522

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367--520	42	3.6	43	81	4	150	33	23	22	20	1.97
11974--11998	13	1.9	13	100	0	50	52	0	0	48	1.00
15194--15235	14	2.9	15	85	3	50	54	2	2	40	1.26
15229--15300	25	2.8	25	80	17	92	47	0	0	52	1.00
15172--15300	53	2.4	54	78	10	131	45	0	0	52	1.11
15173--15323	80	1.9	82	80	8	184	45	2	0	51	1.20
15524--15584	26	2.3	26	80	5	70	62	0	4	32	1.17
15514--15559	22	2.2	20	85	14	58	63	0	2	34	1.07
15537--15594	26	2.2	26	82	14	75	51	0	6	41	1.28
15898--15954	28	2.0	28	100	0	114	54	10	14	21	1.69
16060--16434	186	2.0	186	89	3	567	37	16	11	34	1.84
17259--17283	11	2.3	11	100	0	50	64	0	0	36	0.94
18787--18825	17	2.2	18	90	4	62	58	0	2	38	1.12
18856--18957	49	2.1	50	98	1	197	31	9	7	50	1.64
18859--18975	49	2.5	48	89	9	161	30	11	6	51	1.63
19336--19389	27	2.1	25	83	10	65	20	11	12	55	1.67
19868--19918	24	2.1	24	82	7	59	56	0	1	41	1.10
20162--20227	26	2.5	28	78	16	77	60	4	0	34	1.17
20157--20200	19	2.3	19	84	7	54	56	0	0	43	0.99
21303--21381	41	1.9	42	89	2	124	36	3	18	40	1.69
21345--21465	62	2.0	62	83	6	156	33	6	17	42	1.75
25484--25518	18	1.9	18	88	0	52	54	0	17	28	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28209--28260	25	2.1	25	96	0	95	36	15	13	34	1.87
28707--28733	2	13.5	2	100	0	54	48	0	0	51	1.00
29349--29415	26	2.6	26	90	0	98	41	1	16	40	1.57
31635--31682	3	16.7	3	91	8	82	31	0	0	68	0.90
31913--31937	12	2.1	12	100	0	50	24	8	20	48	1.76
34550--34858	154	2.0	154	100	0	618	27	17	19	35	1.94
37178--37224	25	1.9	24	86	4	67	70	8	21	0	1.14
37182--37227	12	3.8	12	82	5	56	71	8	19	0	1.11
38269--38331	33	1.9	32	84	9	83	28	14	26	30	1.95
38525--38564	16	2.5	16	91	0	62	47	27	2	22	1.64
38942--39176	105	2.3	104	83	8	293	31	17	11	39	1.86
39143--39252	36	3.1	36	80	7	127	33	16	10	39	1.83
39267--39348	31	2.6	31	78	7	94	30	15	15	37	1.90
39550--39607	30	2.0	30	86	3	82	22	22	12	43	1.86
39893--40037	61	2.4	60	84	10	170	32	11	13	42	1.80
40413--40506	28	3.4	28	88	2	127	23	10	14	51	1.74
40469--40522	28	1.9	28	92	7	92	25	12	11	50	1.74
41781--41824	22	2.0	21	87	12	63	75	9	11	4	1.19
46596--46647	12	4.2	12	78	7	50	73	9	17	0	1.09
46598--46641	12	3.6	12	81	6	52	70	9	20	0	1.14
46594--46640	25	1.9	24	86	4	67	70	8	21	0	1.14
47688--47749	33	1.9	32	83	9	81	27	14	27	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47944--47983	16	2.5	16	91	0	62	47	27	2	22	1.64
48361--48596	105	2.3	104	84	8	302	32	16	11	38	1.86
48563--48672	36	3.1	36	81	3	134	33	17	10	38	1.85
48687--48769	32	2.6	31	79	7	96	31	15	15	37	1.89
48710--48768	31	1.9	31	89	3	93	28	13	16	40	1.87
48687--48768	31	2.6	30	80	5	92	30	15	15	37	1.90
48971--49028	30	2.0	30	86	3	82	22	22	12	43	1.86
49318--49456	65	2.2	64	88	5	201	33	10	13	43	1.78
49427--49520	35	2.6	34	83	5	98	30	14	13	40	1.86
49861--49954	28	3.4	28	88	2	127	23	10	14	51	1.74
49917--49970	28	1.9	28	92	7	92	25	12	11	50	1.74
49990--50470	134	3.6	132	81	4	534	27	29	16	26	1.97
50656--50693	13	2.9	13	84	11	51	26	0	0	73	0.83
51276--51319	21	2.1	20	84	16	54	77	9	9	4	1.12
53106--53141	17	2.0	19	89	10	58	36	11	8	44	1.70
55740--55781	18	2.3	18	100	0	84	52	26	11	9	1.68
61617--61735	61	2.0	61	98	0	229	31	5	11	50	1.63
61845--61875	16	1.9	16	93	0	53	38	29	0	32	1.57
62918--62949	6	5.5	6	96	3	57	0	15	53	31	1.43
64414--64453	2	20.0	2	100	0	80	50	0	0	50	1.00
64852--64881	2	15.0	2	100	0	60	50	0	0	50	1.00
66811--67172	119	3.0	120	89	3	543	16	29	13	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66827--67173	60	5.8	60	83	5	445	16	30	12	40	1.86

Tables:   1

The End!