genome.fa.s6484.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006484.1 Hibiscus syriacus cultivar Beakdansim tig00015746_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143820

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433--539	30	3.6	30	78	2	117	14	25	19	40	1.90
556--652	30	3.2	30	78	14	101	12	32	21	32	1.91
3455--3534	38	2.1	39	83	6	101	38	22	12	26	1.90
3863--4122	138	1.9	138	90	1	414	32	18	19	29	1.96
7772--7846	26	2.9	26	70	16	66	52	4	0	44	1.20
10130--10269	64	2.2	62	83	7	174	50	5	15	28	1.67
15476--15542	29	2.2	31	82	12	77	46	4	4	44	1.43
21838--21935	28	3.4	28	77	7	90	50	13	4	32	1.60
21912--21949	20	1.9	20	89	10	60	52	10	10	26	1.68
21886--21985	51	2.0	48	82	5	119	53	10	8	29	1.63
21935--22017	29	2.8	29	92	1	130	51	7	7	33	1.57
21935--22046	29	3.8	29	86	8	122	50	8	6	34	1.59
31347--31391	21	2.1	21	83	0	54	33	11	2	53	1.49
33735--33784	22	2.2	23	82	7	57	60	4	4	32	1.34
34928--35196	131	2.0	135	91	3	438	36	18	17	27	1.94
38351--38393	21	2.0	21	90	0	68	48	0	6	44	1.29
44881--45548	132	5.0	132	94	0	1068	36	16	17	29	1.93
50115--50228	58	2.0	55	88	5	165	31	4	23	40	1.74
51753--51912	64	2.5	65	86	6	211	28	17	23	30	1.97
52986--53029	21	2.1	21	91	0	70	40	11	38	9	1.73
53829--53868	21	1.9	21	89	0	62	35	5	42	17	1.71
55474--55513	20	2.0	20	85	9	55	45	7	20	27	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58906--58938	16	2.1	16	100	0	66	57	24	12	6	1.57
59004--59071	10	7.1	10	71	26	58	58	20	11	8	1.59
59003--59071	23	2.9	24	86	2	104	59	20	11	8	1.58
59027--59079	13	4.2	13	73	24	51	60	24	9	5	1.49
59006--59079	23	3.2	23	84	5	96	59	22	10	6	1.54
59066--59141	31	2.5	31	93	4	127	56	28	3	10	1.51
59360--59405	14	3.1	14	93	6	74	52	17	15	15	1.76
60244--60275	16	2.0	16	93	0	55	34	6	25	34	1.81
62806--62864	21	2.8	21	89	2	91	27	20	28	23	1.99
63637--63681	21	2.1	22	87	4	65	17	24	31	26	1.97
63713--63768	13	4.4	13	70	20	55	23	14	26	35	1.93
69911--70835	354	2.6	354	97	0	1746	32	13	14	38	1.86
71543--71602	11	5.6	11	75	11	54	30	1	0	68	0.99
71661--71694	3	11.3	3	100	0	68	32	0	0	67	0.91
72282--72344	31	2.0	31	87	6	92	57	6	0	36	1.24
73268--73351	41	2.0	41	97	0	159	26	13	20	40	1.88
78450--78586	71	1.9	71	96	0	256	16	13	10	59	1.62
78483--78578	6	15.2	6	78	10	68	15	14	12	57	1.66
78426--78602	71	2.7	65	87	8	250	16	12	11	58	1.63
82042--82066	9	2.8	9	100	0	50	40	12	0	48	1.40
85932--86107	40	4.4	40	92	0	271	30	17	11	40	1.85
85932--86165	40	5.9	39	84	5	122	29	18	12	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86558--86621	20	3.2	20	65	12	60	42	10	21	25	1.85
86638--86979	136	2.6	136	90	2	523	34	19	22	23	1.96
86784--87224	242	1.8	245	88	3	685	36	16	21	25	1.94
91450--91496	18	2.6	18	86	0	58	2	23	0	74	0.93
98365--98423	22	2.8	21	71	19	59	44	10	15	30	1.79
101020--101069	22	2.2	23	82	7	57	60	4	4	32	1.34
102213--102607	132	3.0	132	93	1	664	36	16	17	29	1.92
102777--102801	11	2.3	11	100	0	50	40	8	16	36	1.77
104868--104907	16	2.5	16	88	12	64	37	2	0	60	1.11
110761--110917	61	2.6	58	78	15	185	31	21	8	38	1.83
110996--111128	60	2.2	60	79	2	151	40	4	22	32	1.74
117252--117410	60	2.6	59	71	14	137	38	6	23	31	1.80
122501--122563	24	2.6	24	87	5	83	12	12	19	55	1.68
122541--122576	14	2.6	14	100	0	72	19	11	8	61	1.54
123489--123544	15	3.7	16	83	9	73	10	12	21	55	1.67
123551--123609	30	2.0	30	86	6	84	45	13	10	30	1.76
125212--125251	19	2.0	21	90	9	66	32	25	37	5	1.77
125690--125723	16	2.1	16	88	0	50	35	8	23	32	1.86
129761--129802	20	2.0	22	90	9	70	30	23	40	4	1.75
130493--130644	79	1.9	79	97	0	286	26	20	11	41	1.86
132293--132324	3	10.3	3	93	6	55	65	0	0	34	0.93
135118--135148	12	2.7	12	95	5	55	12	16	0	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135136--135167	17	1.9	17	93	6	57	18	12	0	68	1.20
136284--136322	21	1.9	21	89	5	62	17	25	23	33	1.96
136285--136375	10	9.3	9	74	15	65	17	27	25	29	1.97
136285--136375	30	3.1	30	84	12	118	17	27	25	29	1.97
136286--136375	19	4.6	19	76	14	85	16	27	25	30	1.97
136377--136431	17	3.2	17	97	0	101	18	45	23	12	1.83
143534--143572	21	1.9	21	89	5	62	17	25	23	33	1.96
143535--143625	10	9.3	9	76	15	74	17	27	25	29	1.97
143535--143625	30	3.1	29	84	6	112	17	27	25	29	1.97
143534--143625	19	4.7	19	79	11	96	18	27	25	29	1.98
143592--143632	19	2.2	19	86	0	55	21	26	26	24	2.00
143628--143690	22	3.1	21	73	21	62	19	44	22	14	1.86
143652--143690	12	3.4	12	79	13	55	17	46	23	12	1.83
143630--143678	17	2.9	17	87	0	71	20	42	22	14	1.88

Tables:   1

The End!