genome.fa.s6485.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006485.1 Hibiscus syriacus cultivar Beakdansim tig00015761_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144163

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3345--3377	3	11.3	3	93	6	59	69	0	0	30	0.88
4104--4415	41	7.6	40	68	17	124	33	15	16	35	1.90
4104--4415	82	3.8	81	69	13	217	33	15	16	35	1.90
4310--4444	41	3.3	40	81	4	153	30	15	18	35	1.92
5151--5206	23	2.4	22	82	8	58	50	1	0	48	1.11
5155--5221	30	2.2	32	81	10	77	47	1	0	50	1.10
6688--6739	21	2.4	21	87	3	68	32	13	15	38	1.86
8449--8824	41	9.1	41	71	12	204	34	16	16	32	1.91
10293--10350	21	2.8	20	86	5	71	20	5	24	50	1.69
10698--10779	42	2.0	42	85	2	112	39	18	12	30	1.87
22567--22612	21	2.2	21	88	0	65	34	13	17	34	1.88
25988--26108	40	3.0	41	85	3	156	30	19	17	33	1.94
25993--26183	41	4.6	41	78	7	199	28	18	17	35	1.94
27590--28155	296	1.9	298	83	4	739	28	13	19	39	1.89
28444--28554	41	2.7	41	85	0	132	28	19	13	37	1.90
28654--28827	41	4.2	41	70	8	120	31	17	15	35	1.91
30245--30695	239	1.8	244	84	6	617	27	13	19	40	1.88
31631--31689	21	2.8	21	84	0	82	22	5	22	50	1.68
31913--32005	44	2.1	44	84	4	125	32	17	19	31	1.95
33267--33321	28	2.0	28	86	13	78	50	7	16	25	1.70
37381--37501	61	2.0	61	98	0	233	32	20	9	38	1.84
37573--38482	455	2.0	448	94	1	1588	35	17	20	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40154--40208	3	18.3	3	100	0	110	67	0	0	32	0.91
46612--46655	21	2.1	21	86	0	61	38	13	11	36	1.81
49606--49758	41	3.8	41	76	6	116	33	15	20	30	1.94
49873--49989	41	2.9	41	77	7	121	30	15	17	35	1.91
50174--50217	22	2.0	22	81	0	52	47	2	0	50	1.13
50395--50449	23	2.4	21	77	16	56	52	3	0	43	1.18
50411--50457	21	2.1	23	84	7	62	48	0	0	51	1.00
52059--52103	21	2.1	21	87	0	63	22	4	20	53	1.63
52272--52363	44	2.1	43	81	2	103	36	19	16	27	1.93
54311--54356	23	2.0	23	100	0	92	21	47	13	17	1.81
56080--56138	20	2.7	21	87	10	75	28	23	20	27	1.99
65620--65681	23	2.9	21	85	7	81	20	35	25	17	1.95
69445--69471	2	13.5	2	100	0	54	48	0	0	51	1.00
72610--72655	21	2.2	21	84	0	56	34	13	17	34	1.88
79505--79540	3	12.3	3	94	5	65	69	0	0	30	0.89
80263--80370	41	2.6	41	86	2	146	30	15	17	36	1.91
80468--80602	41	3.3	40	73	5	108	31	17	17	34	1.92
81274--81366	12	7.6	12	76	12	57	51	4	0	44	1.21
81296--81365	11	6.3	11	70	6	52	55	5	0	38	1.24
81294--81340	14	3.4	14	93	0	76	59	4	0	36	1.17
81294--81340	17	2.9	17	84	9	55	59	4	0	36	1.17
81530--81576	21	2.1	23	84	7	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81663--81706	14	3.2	13	84	15	61	54	0	2	43	1.12
81651--81705	28	1.9	29	82	10	69	54	0	3	41	1.18
81864--81890	14	1.9	14	100	0	54	37	7	14	40	1.74
83511--83555	21	2.1	21	83	0	54	20	8	22	48	1.76
83956--84024	27	2.6	27	85	0	102	4	8	33	53	1.51
84026--84057	15	2.1	16	88	11	50	12	6	21	59	1.55
85495--85537	22	1.9	23	85	4	61	48	2	2	46	1.27
93313--93446	68	2.0	67	91	4	216	16	32	5	44	1.72
94017--94088	31	2.3	32	78	7	76	48	6	0	44	1.29
96228--96287	21	2.8	21	84	2	75	21	6	23	48	1.74
96624--96702	41	1.9	42	84	2	106	41	17	12	27	1.86
106129--106296	44	3.9	44	75	9	148	30	20	16	33	1.94
108410--108444	3	11.7	3	100	0	70	68	0	0	31	0.90
108749--108800	21	2.4	21	80	3	59	28	13	21	36	1.91
111120--111181	30	2.1	30	100	0	124	29	22	19	29	1.98
112266--112472	41	5.0	41	84	0	234	30	18	15	34	1.92
112587--112745	41	3.9	41	69	9	126	32	16	15	36	1.90
114704--114890	93	2.0	94	97	2	360	26	6	21	45	1.75
115546--115604	21	2.8	21	84	0	82	22	5	22	50	1.68
115822--115964	44	3.2	44	91	2	225	33	18	18	29	1.95
117224--117278	28	2.0	28	86	13	78	50	7	16	25	1.70
121341--121461	61	2.0	61	96	0	224	32	21	9	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121533--122442	455	2.0	448	95	2	1626	35	17	20	27	1.94
134168--134211	21	2.1	21	86	0	61	38	13	11	36	1.81
136484--136652	41	4.1	40	75	15	141	33	15	16	34	1.91
136494--136653	81	2.0	82	81	10	195	31	15	16	36	1.89
143577--143728	60	2.5	60	79	11	143	42	2	21	33	1.66
143638--143760	60	2.0	60	83	6	151	43	1	21	32	1.63

Tables:   1

The End!