Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006486.1 Hibiscus syriacus cultivar Beakdansim tig00015762_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107053

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73--128
24
2.4
23
85
14
71
62
19
5
12
1.49
4207--4288
42
2.0
42
83
9
105
41
10
21
25
1.86
18075--18123
22
2.2
22
85
3
62
55
8
0
36
1.30
18095--18314
32
7.7
32
71
25
181
52
11
0
35
1.41
18095--18142
14
3.1
15
72
21
53
54
6
0
39
1.26
18127--18613
54
9.0
53
72
16
308
52
12
0
34
1.42
18078--18394
80
3.9
79
80
9
282
52
12
0
34
1.42
18240--18339
26
3.6
26
74
19
103
55
17
0
28
1.42
18297--18370
22
3.2
22
70
16
60
55
17
0
27
1.42
18341--18534
32
6.7
32
81
16
230
52
12
0
34
1.40
18218--18614
112
3.6
112
89
4
589
52
13
0
33
1.41
18405--18469
22
3.0
22
100
0
130
50
13
0
35
1.42
18477--18693
80
2.7
80
92
4
368
52
12
0
35
1.40
18565--18616
18
3.1
18
68
21
58
55
11
0
32
1.36
18064--18759
300
2.3
300
82
8
862
52
12
0
35
1.40
18518--18634
26
4.4
26
67
23
82
52
14
0
32
1.42
18673--18715
22
2.0
22
95
0
77
53
11
0
34
1.37
18063--18759
54
12.8
54
71
15
273
52
12
0
35
1.40
18691--18776
33
2.5
35
86
7
113
52
6
0
40
1.28
18747--18821
15
5.0
15
93
0
123
48
0
0
52
1.00
20514--20544
6
5.2
6
100
0
62
32
16
19
32
1.94
23345--23510
3
55.7
3
92
1
280
32
2
0
65
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24909--24950
21
2.0
22
85
4
59
35
2
2
59
1.23
35918--35999
7
11.6
7
80
14
80
81
0
15
2
0.79
35923--36012
5
18.6
5
77
15
75
81
0
16
2
0.80
35921--36012
19
4.8
18
81
10
103
81
0
16
2
0.79
35918--36013
32
2.9
31
75
21
81
80
0
17
2
0.81
35918--36012
39
2.5
39
86
8
124
81
0
16
2
0.80
36337--36381
18
2.6
18
89
6
67
31
6
6
55
1.52
37146--37612
81
5.7
82
90
4
719
28
14
22
35
1.93
37146--37615
165
2.8
165
92
2
793
28
14
21
35
1.93
38344--38785
113
3.9
113
96
0
805
38
12
20
29
1.89
39100--39254
3
51.7
3
92
0
256
32
2
0
65
1.07
40655--40694
20
2.0
21
85
5
55
37
2
2
57
1.26
43800--43859
16
3.6
16
80
10
57
56
28
1
13
1.47
51232--51321
44
2.1
43
83
6
110
52
25
3
18
1.61
53399--53462
31
1.9
33
84
12
87
56
9
6
28
1.55
62612--62637
2
13.0
2
100
0
52
50
0
50
0
1.00
63171--63201
15
2.1
15
93
0
53
70
0
0
29
0.87
63229--63283
17
3.0
19
77
15
53
38
1
0
60
1.08
63183--63256
37
2.0
38
84
12
100
50
0
1
48
1.09
63227--63265
20
2.0
20
90
5
62
43
0
0
56
0.99
67962--68143
90
2.0
90
95
0
328
39
15
15
29
1.88
68199--68228
10
3.0
10
95
0
51
16
3
30
50
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69703--69771
2
34.5
2
100
0
138
49
0
0
50
1.00
69872--69929
29
2.0
29
86
0
80
13
36
25
24
1.92
69969--70038
10
6.7
10
71
26
56
22
37
30
10
1.87
69972--70057
14
5.4
14
70
24
55
23
37
31
8
1.84
69986--70038
20
2.7
20
91
2
90
22
35
32
9
1.86
69986--70038
10
5.4
10
75
20
58
22
35
32
9
1.86
73326--73366
10
4.1
10
87
0
64
7
12
21
58
1.58
73326--73363
20
1.9
20
100
0
76
5
13
23
57
1.56
78687--78821
21
6.4
21
95
0
234
22
26
22
28
1.99
79503--79558
21
2.7
21
88
0
85
32
21
23
23
1.98
79552--79626
21
3.6
21
85
0
96
33
18
22
25
1.97
81151--81199
24
2.0
24
84
0
62
16
18
18
46
1.84
83876--83996
59
2.0
60
82
4
147
38
14
14
32
1.86
87906--88026
29
4.1
28
69
8
73
42
6
9
42
1.62
87875--88019
58
2.5
59
76
14
145
41
5
8
44
1.59
88309--88380
26
2.6
28
74
12
69
20
15
12
51
1.75
95542--95746
75
2.7
76
85
7
267
21
23
31
22
1.99
103767--103970
75
2.7
76
87
3
279
20
24
31
23
1.98
104880--104922
21
2.0
21
100
0
86
37
37
9
16
1.81

Tables:   1

The End!