genome.fa.s6487.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006487.1 Hibiscus syriacus cultivar Beakdansim tig00015769_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142685

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314--360	22	2.1	22	84	7	60	51	21	8	19	1.73
321--367	22	2.1	22	84	7	60	59	17	8	14	1.59
991--1035	22	2.0	23	91	4	74	37	13	15	33	1.86
4818--4860	22	2.0	22	81	9	52	25	9	20	44	1.81
7831--7894	3	22.0	3	78	12	71	67	1	3	28	1.15
7833--7900	32	2.1	32	91	5	111	66	2	4	26	1.25
8105--8403	130	2.3	130	91	1	474	25	19	29	25	1.98
8138--8388	43	5.7	45	70	13	128	25	19	28	26	1.99
8267--8427	83	1.9	83	85	7	223	24	19	31	24	1.98
8470--8527	28	2.1	28	87	6	82	50	13	10	25	1.74
8534--8658	64	2.0	64	83	3	162	41	14	19	24	1.88
8863--8921	15	3.9	15	95	0	100	44	5	20	30	1.73
9078--9201	63	2.0	63	84	4	162	43	11	14	30	1.80
9296--9352	30	2.0	28	82	6	69	45	10	14	29	1.78
9435--9561	37	3.6	37	69	22	112	44	11	11	31	1.77
9382--9579	67	3.0	66	88	5	276	44	12	12	30	1.79
9555--9606	27	1.9	27	96	0	95	50	11	9	28	1.70
9694--9787	28	3.4	27	81	11	111	48	14	10	25	1.76
10032--10135	36	3.0	36	83	4	133	35	11	20	32	1.88
10033--10151	36	3.4	36	80	6	120	36	12	21	30	1.90
10032--10163	70	1.9	69	80	10	151	34	12	19	33	1.90
10103--10342	105	2.3	104	84	6	301	38	11	20	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10309--10445	36	3.8	36	82	5	170	35	13	19	31	1.90
10309--10443	71	1.9	72	87	4	202	34	13	20	31	1.91
10802--10877	16	5.2	16	66	23	60	26	0	26	47	1.52
10802--10877	28	2.7	28	97	0	143	26	0	26	47	1.52
10814--10864	4	13.8	4	76	15	56	29	0	23	47	1.52
12050--12091	12	3.6	11	87	9	57	4	14	11	69	1.34
12075--12116	19	2.2	19	91	0	66	2	19	9	69	1.28
12093--12143	12	4.0	13	82	9	61	1	13	7	76	1.09
12085--12137	26	2.0	27	92	3	90	1	18	9	69	1.25
14182--14243	32	2.0	32	96	3	117	61	9	14	14	1.57
18108--18160	3	18.0	3	77	11	56	66	1	3	28	1.20
22597--22731	67	2.0	67	84	5	175	39	7	19	34	1.79
23218--23276	25	2.3	26	97	2	111	33	5	0	61	1.18
23272--24033	204	3.7	204	93	1	1228	28	25	16	29	1.97
25581--25754	28	6.2	27	67	21	76	45	0	1	52	1.12
25650--25753	29	3.6	29	79	18	110	44	0	1	53	1.11
25602--25746	52	2.7	51	74	19	118	45	0	1	52	1.14
25709--25761	20	2.7	19	73	18	54	49	0	1	49	1.12
25756--25800	23	2.0	23	86	0	63	53	2	2	42	1.25
26103--26143	14	2.9	14	88	0	55	36	19	14	29	1.92
26145--26190	15	3.1	15	75	6	58	30	17	8	43	1.79
26133--26171	20	2.0	20	84	0	51	33	17	7	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26155--26223	36	1.9	35	91	2	111	30	20	7	42	1.79
26509--26603	49	1.9	49	89	4	147	17	36	30	14	1.90
28163--28202	18	2.1	20	90	9	66	35	0	0	65	0.93
29234--29303	20	3.5	20	86	0	95	30	20	12	37	1.90
29233--29323	40	2.3	40	78	3	103	29	20	13	36	1.91
37831--37967	69	2.0	69	100	0	274	33	16	21	29	1.95
42699--42767	31	2.3	31	90	7	106	27	24	14	33	1.94
43502--43545	13	3.5	13	90	6	72	18	52	15	13	1.75
43645--43699	24	2.3	24	87	0	74	25	45	14	14	1.83
43645--43699	12	4.6	12	79	0	56	25	45	14	14	1.83
60932--61094	48	3.4	48	93	0	281	27	20	23	28	1.99
64128--64160	2	16.5	2	100	0	66	48	0	0	51	1.00
65070--65169	42	2.4	42	96	0	182	26	40	12	22	1.88
67058--67113	22	2.5	22	80	16	69	53	0	7	39	1.28
67434--67478	5	9.0	5	97	0	81	0	22	0	77	0.76
67613--67651	17	2.3	17	100	0	78	10	0	35	53	1.35
73690--73721	15	2.1	15	100	0	64	40	9	25	25	1.85
78299--78399	39	2.6	39	84	1	132	24	5	9	59	1.52
79476--79600	60	2.1	60	85	5	164	32	19	19	29	1.96
79953--79977	7	3.6	7	100	0	50	28	0	0	72	0.86
82510--82543	2	16.0	2	88	11	50	47	5	0	47	1.26
85131--85208	29	2.7	28	82	11	79	43	10	6	39	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85587--85612	2	13.0	2	100	0	52	50	0	0	50	1.00
91020--91200	98	1.8	98	91	0	299	29	9	15	45	1.78
92436--92492	29	1.9	30	82	10	73	61	14	3	21	1.47
94669--94709	11	3.6	11	83	3	55	60	2	4	31	1.30
116418--116800	191	2.0	191	99	0	757	33	18	15	32	1.92
120092--120135	21	2.1	21	87	8	63	54	2	9	34	1.44
122926--122956	2	15.5	2	100	0	62	51	0	0	48	1.00
127869--127968	26	3.3	32	74	13	88	54	0	10	36	1.34
127923--127979	26	2.1	28	87	6	82	57	1	1	38	1.19
128663--128696	13	2.8	12	86	4	50	70	0	29	0	0.87
128663--128696	6	5.5	6	86	6	50	70	0	29	0	0.87
129415--129449	2	17.5	2	100	0	70	51	0	0	48	1.00
130942--130986	20	2.2	21	84	7	58	42	0	2	55	1.12
136452--136521	28	2.5	28	100	0	140	35	11	15	37	1.84
136562--136692	35	3.7	35	95	0	235	32	15	21	30	1.94
138356--138422	29	2.3	29	81	0	89	37	4	22	35	1.75
139693--139814	40	3.0	40	97	0	235	23	17	26	32	1.96
139953--140081	49	2.7	48	86	5	179	38	7	20	32	1.82
140470--140528	30	2.0	30	89	0	91	22	15	28	33	1.94

Tables:   1

The End!