genome.fa.s6488.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006488.1 Hibiscus syriacus cultivar Beakdansim tig00015780_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55670

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
957--990	17	1.9	17	88	5	50	29	29	2	38	1.72
3786--3816	8	3.9	8	91	0	53	12	22	9	54	1.67
8461--8485	2	12.5	2	100	0	50	48	0	0	52	1.00
10793--10853	2	30.5	2	100	0	122	49	0	0	50	1.00
11463--11500	20	1.9	20	88	0	58	44	0	5	50	1.24
13234--13309	39	1.9	39	89	0	116	36	13	19	30	1.90
16323--16445	60	2.0	60	80	7	133	29	16	18	35	1.93
19810--20006	32	6.3	32	75	3	168	37	24	11	27	1.89
19810--19942	62	2.1	63	84	2	178	37	26	10	25	1.88
19810--20006	94	2.1	94	89	0	304	37	24	11	27	1.89
20670--20715	24	1.9	24	95	0	83	32	2	34	30	1.70
21404--21447	3	14.3	3	95	4	79	31	0	0	68	0.90
21404--21447	22	2.0	22	95	4	81	31	0	0	68	0.90
23507--23540	17	1.9	18	88	5	52	38	2	2	55	1.30
27475--27552	26	3.2	25	64	22	67	23	23	11	42	1.86
28171--28217	24	2.0	24	84	16	62	76	4	17	2	1.04
29398--29763	4	92.0	4	97	1	700	50	24	0	25	1.50
30089--30133	2	22.5	2	100	0	90	51	0	0	48	1.00
30439--30534	36	2.7	36	82	7	108	34	19	13	32	1.91
30466--30569	36	3.0	36	80	4	115	32	20	12	34	1.90
30820--31064	29	8.5	28	74	14	171	27	10	15	46	1.77
30817--31064	54	4.3	54	71	18	137	27	10	15	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30791--31125	147	2.3	147	96	1	613	26	11	15	46	1.80
31075--31178	52	2.0	53	94	3	183	32	13	17	36	1.89
31164--31296	30	4.2	30	73	12	113	34	9	13	42	1.77
31177--31349	67	2.6	67	90	1	269	31	10	11	46	1.75
31212--31338	37	3.6	37	69	16	108	31	11	11	45	1.76
31449--31673	120	1.9	119	80	8	269	31	13	12	43	1.81
31571--31695	64	2.0	63	88	1	187	32	13	11	43	1.79
31862--31896	15	2.3	15	95	0	61	40	20	2	37	1.67
32577--32951	40	8.6	40	70	20	202	26	34	18	20	1.96
32609--32949	43	7.6	47	71	19	182	27	34	18	19	1.95
32577--32958	134	2.9	134	93	0	640	26	34	18	20	1.95
33173--33216	3	14.3	3	95	4	79	31	0	0	68	0.90
33173--33216	22	2.0	22	95	4	81	31	0	0	68	0.90
35254--35299	24	1.9	24	95	0	83	32	2	34	30	1.70
46759--46787	14	2.1	14	100	0	58	48	10	34	6	1.64
50812--50837	13	2.0	13	100	0	52	15	30	15	38	1.88
53835--54258	112	3.8	109	85	10	540	39	23	7	29	1.81
53835--54258	224	1.9	222	86	7	610	39	23	7	29	1.81
54172--54255	41	2.0	43	86	13	122	41	25	5	27	1.78

Tables:   1

The End!