genome.fa.s6489.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006489.1 Hibiscus syriacus cultivar Beakdansim tig00015782_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102961

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7812--7860	21	2.3	21	92	0	80	26	10	44	18	1.81
8123--8189	27	2.5	27	75	4	73	20	5	40	32	1.77
15038--15073	19	1.9	18	94	5	63	55	5	0	38	1.23
15025--15079	18	3.0	18	76	12	58	61	3	0	34	1.13
15200--15224	9	2.8	9	100	0	50	48	0	0	52	1.00
16356--16428	31	2.4	31	83	4	85	50	9	9	30	1.67
23045--23070	7	3.7	7	100	0	52	30	11	11	46	1.76
23956--24029	3	24.7	3	93	5	114	62	0	0	37	0.96
27067--27328	98	2.7	97	85	7	341	27	20	12	39	1.89
28127--28185	29	2.1	29	93	3	102	33	6	45	13	1.70
32438--32465	2	14.0	2	100	0	56	50	0	0	50	1.00
34978--35009	16	2.0	16	100	0	64	62	0	0	37	0.95
39402--39519	59	2.0	59	91	0	191	26	19	11	42	1.86
42598--42644	22	2.2	22	84	3	60	19	14	6	59	1.56
47227--47267	22	1.9	22	90	5	66	31	0	0	68	0.90
48106--48138	17	1.9	18	88	11	52	48	3	0	48	1.17
51710--51800	42	2.2	42	86	4	121	19	12	18	49	1.79
52039--52181	25	6.0	22	70	18	90	48	0	0	49	1.11
52014--52076	21	3.1	21	80	8	60	49	0	1	49	1.10
52126--52173	19	2.5	20	82	3	62	45	0	0	54	0.99
52042--52198	50	3.1	52	73	18	143	49	1	0	48	1.13
52193--52237	23	2.0	23	86	0	63	53	2	2	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55823--55866	14	3.0	14	81	18	54	65	0	0	34	0.93
55823--55865	17	2.6	18	85	14	65	67	0	0	32	0.91
56167--56417	84	3.1	83	71	8	219	24	20	25	29	1.99
56624--57475	106	8.0	106	93	1	1386	22	18	25	33	1.97
56624--57506	426	2.1	425	91	2	1430	22	19	25	32	1.97
60188--60226	16	2.5	15	84	12	51	76	2	15	5	1.06
63707--63756	13	4.1	12	78	19	50	72	0	0	28	0.86
63714--63756	14	3.1	14	83	16	54	69	0	0	30	0.88
63708--63759	17	3.1	17	81	13	63	71	0	0	28	0.87
65596--65680	32	2.7	32	83	3	91	27	18	11	42	1.85
65620--65680	16	3.8	16	93	0	104	26	22	9	40	1.85
65753--65795	21	2.0	21	86	0	59	51	0	0	48	1.00
65791--65978	22	8.7	21	75	19	108	36	9	1	53	1.40
65793--65934	36	4.1	36	76	15	174	36	8	1	53	1.40
65762--65901	73	1.9	73	83	11	180	38	6	1	53	1.35
65822--65986	65	2.6	64	84	10	203	36	9	1	53	1.41
65811--65985	14	11.9	15	71	17	66	36	8	1	54	1.39
67614--67882	4	67.0	4	98	0	520	49	24	0	25	1.50
67951--67990	17	2.5	16	88	8	55	42	12	7	37	1.71
67994--68052	21	2.8	20	82	7	73	23	0	30	45	1.53
68136--68188	2	27.0	2	79	11	56	45	1	3	49	1.31
68127--68183	13	4.3	13	82	12	71	43	0	5	50	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69034--69088	19	2.8	20	75	5	58	27	25	0	47	1.52
69166--69204	2	19.0	2	94	5	69	48	2	0	48	1.15
69166--69352	15	12.3	15	70	16	86	44	3	4	47	1.42
69247--69306	13	4.5	13	82	4	66	43	3	8	45	1.50
69240--69323	28	3.2	25	85	10	89	42	3	7	46	1.48
69240--69323	26	3.1	27	80	13	84	42	3	7	46	1.48
69344--69378	17	2.1	16	89	5	52	42	2	0	54	1.15
72117--72178	24	2.6	25	80	12	76	43	3	0	53	1.17
72106--72178	25	3.0	25	77	15	82	43	2	0	53	1.15
72106--72189	25	3.2	27	71	21	72	45	2	0	52	1.13
72157--72244	33	2.8	30	75	12	97	40	1	2	55	1.20
73268--73309	2	21.0	2	100	0	84	50	0	0	50	1.00
81542--81581	21	1.9	21	89	0	62	25	40	25	10	1.86
88819--88862	24	1.9	23	90	9	72	47	0	2	50	1.13
91232--91270	20	2.0	19	85	5	51	48	0	0	51	1.00
102355--102393	2	20.0	2	94	5	71	51	0	0	48	1.00

Tables:   1

The End!