genome.fa.s649.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000649.1 Hibiscus syriacus cultivar Beakdansim tig00001255_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85629

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2385--2424	20	2.0	20	90	9	64	47	10	5	37	1.59
2381--2530	53	2.9	52	94	3	257	48	12	6	32	1.67
2438--2477	20	2.0	21	90	5	64	45	15	5	35	1.68
2489--2529	20	2.0	21	90	4	66	39	17	7	36	1.77
3168--3260	46	2.0	46	100	0	186	29	15	23	32	1.95
6441--6473	17	2.0	17	88	5	50	21	18	12	48	1.80
7622--7667	24	2.0	23	83	12	58	52	2	0	45	1.13
19287--19467	94	1.9	96	85	4	251	29	13	16	40	1.87
19383--19646	103	2.5	103	78	4	271	28	14	15	42	1.86
21296--21350	3	18.0	3	81	10	67	32	0	3	63	1.12
26469--26609	72	2.0	72	94	2	248	43	20	10	25	1.84
27654--27700	23	2.0	23	83	0	58	65	6	2	25	1.27
34890--34920	16	1.9	16	100	0	62	32	6	3	58	1.40
35979--36040	32	2.0	32	96	3	117	14	14	9	61	1.57
38472--38550	26	3.3	25	68	21	78	24	21	10	44	1.83
38479--38550	20	3.3	20	68	20	63	23	22	11	43	1.85
40373--40410	4	10.0	4	83	11	53	50	23	0	26	1.50
40361--40405	16	2.8	16	83	6	56	51	26	0	22	1.49
40955--41072	36	3.3	36	83	8	159	33	16	12	36	1.87
40955--41089	71	1.9	72	85	1	191	32	19	14	34	1.91
40996--41314	167	1.9	166	84	7	423	32	17	11	37	1.87
41175--41256	36	2.3	36	78	4	94	36	19	12	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41230--41468	105	2.3	102	83	7	288	30	20	11	37	1.87
41063--41695	273	2.3	267	84	6	801	31	17	11	38	1.86
41414--41495	36	2.3	36	80	4	94	31	20	9	37	1.85
41430--41533	36	3.0	36	81	4	124	32	20	11	35	1.88
41847--41944	29	3.5	29	86	5	139	26	11	15	46	1.79
41833--41956	29	4.4	28	83	8	137	25	10	15	48	1.77
41953--42056	52	2.0	53	92	3	174	32	13	18	35	1.90
42044--42107	30	2.1	30	91	0	101	35	9	15	39	1.80
42036--42112	30	2.7	29	82	9	95	32	7	16	42	1.77
42931--43019	28	3.1	28	83	4	99	28	12	14	44	1.81
43132--43313	46	4.1	46	73	15	168	24	30	18	26	1.98
43045--43373	40	7.7	41	71	15	204	24	30	18	26	1.98
43032--43464	130	3.3	130	87	4	568	25	29	20	24	1.99
43387--43555	91	1.8	93	89	2	270	25	26	24	24	2.00
45827--45857	16	1.9	16	100	0	62	32	6	3	58	1.40
47704--50210	851	2.9	852	99	0	5000	35	16	16	31	1.91
55413--55905	243	2.0	244	98	0	961	36	18	20	24	1.95
57407--57437	15	2.1	15	93	0	53	45	6	16	32	1.72
59694--59725	11	2.8	12	90	9	57	50	15	0	34	1.45
67606--67754	64	2.3	64	91	2	237	29	1	16	52	1.52
69252--69288	18	2.1	18	89	0	56	51	10	5	32	1.60
69674--69722	25	2.0	25	92	4	82	44	18	8	28	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70138--70173	18	2.0	18	94	0	63	19	2	22	55	1.56
70862--70899	16	2.5	15	84	12	51	65	0	5	28	1.14
71067--71130	20	3.1	21	77	6	69	37	10	20	31	1.87
71142--71188	20	2.3	20	88	0	67	31	17	21	29	1.96
71839--71873	15	2.3	15	90	0	52	48	8	5	37	1.58
72637--72699	30	2.1	31	88	5	94	19	3	14	63	1.43
75908--75934	2	13.5	2	100	0	54	48	0	0	51	1.00
76595--76649	20	2.7	19	91	5	74	30	7	36	25	1.83
76613--76673	10	6.1	10	71	5	52	37	3	37	21	1.70
76613--76660	20	2.4	20	85	0	60	37	4	35	22	1.74

Tables:   1

The End!