genome.fa.s6490.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006490.1 Hibiscus syriacus cultivar Beakdansim tig00015784_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106404

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3987--4057	30	2.4	30	73	4	72	33	9	4	52	1.54
4268--4319	19	2.4	24	66	30	60	38	17	19	25	1.93
4275--4320	19	2.4	19	100	0	92	39	17	19	23	1.92
5045--5092	2	25.5	2	87	12	75	54	0	0	45	0.99
7223--7279	22	2.6	22	88	0	87	29	24	14	31	1.94
15549--15624	29	2.6	29	97	0	143	19	43	25	11	1.85
15640--15706	14	4.4	14	77	20	71	25	38	28	7	1.83
15636--15702	34	2.0	34	100	0	134	25	38	26	8	1.85
15688--15770	33	2.6	33	88	3	116	26	28	36	8	1.86
15836--15868	14	2.4	14	94	0	57	6	33	39	21	1.78
15855--15911	10	5.7	10	80	15	73	10	26	36	26	1.89
15855--15912	20	2.9	20	97	0	107	10	27	36	25	1.89
16090--16116	2	13.5	2	100	0	54	48	0	0	51	1.00
17347--17397	18	2.9	18	85	2	68	39	7	25	27	1.83
17782--18334	257	2.2	251	80	13	589	43	17	10	28	1.82
22310--22473	85	1.9	85	93	0	283	36	24	14	24	1.93
22722--22759	20	1.9	20	94	0	67	31	18	26	23	1.97
22601--22959	92	3.9	90	76	15	319	30	12	23	34	1.91
26763--26821	31	2.0	27	87	12	82	49	0	3	47	1.18
28060--28092	2	16.5	2	100	0	66	48	0	0	51	1.00
28495--28548	12	4.2	12	85	9	54	64	7	1	25	1.30
28510--28543	3	11.3	3	100	0	68	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33702--33890	95	2.0	95	93	2	326	34	16	23	25	1.96
33704--33911	95	2.2	95	90	1	319	35	16	23	24	1.95
34247--34785	54	9.9	54	88	0	691	31	17	19	31	1.95
34359--34500	27	5.3	27	63	18	89	28	18	21	32	1.96
34687--34832	55	2.7	55	90	1	213	34	19	20	25	1.96
35011--35201	68	2.8	67	84	3	247	32	14	21	31	1.93
35311--35336	2	13.0	2	100	0	52	50	0	0	50	1.00
35394--35608	45	4.8	45	91	0	322	48	4	20	26	1.68
35394--35640	90	2.7	90	88	3	320	46	5	21	26	1.72
40398--40463	32	2.1	32	94	0	114	22	13	7	56	1.63
42822--42874	21	2.5	21	93	0	88	28	28	22	20	1.99
43070--43124	13	4.2	13	75	13	58	49	12	3	34	1.59
43110--43208	33	3.0	33	94	1	164	45	15	7	32	1.73
45540--45584	12	3.6	12	80	11	54	20	20	15	44	1.87
45539--45578	12	3.1	13	79	13	55	25	17	12	45	1.83
48220--48245	4	6.5	4	100	0	52	26	0	0	73	0.84
48854--48908	20	2.7	21	80	5	67	38	18	23	20	1.93
48939--48990	20	2.6	21	82	11	65	28	26	17	26	1.97
49512--49576	19	3.4	19	84	2	76	44	26	18	10	1.82
49572--49737	20	9.1	19	75	16	145	12	22	22	42	1.86
49625--49712	33	2.6	33	92	1	140	11	25	25	38	1.89
51793--51859	21	3.2	21	66	6	55	23	35	20	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51737--51859	42	2.9	42	79	2	113	23	36	17	22	1.94
55629--55666	14	2.7	15	84	12	53	50	18	0	31	1.47
56030--56085	20	2.8	20	91	0	85	37	21	23	17	1.94
56114--56158	18	2.4	19	88	7	74	17	22	13	46	1.83
56275--56310	13	2.7	13	86	4	54	50	22	0	27	1.50
58177--58212	18	1.9	19	94	5	65	52	22	13	11	1.72
58253--58310	14	3.9	14	79	16	71	8	17	25	48	1.75
58236--58318	32	2.5	33	96	3	159	9	19	22	48	1.78
58324--58365	20	2.1	20	86	0	57	19	16	26	38	1.92
58838--58882	18	2.5	18	85	0	63	15	15	42	26	1.87
60202--60255	20	2.7	19	77	2	54	50	22	14	12	1.77
60488--60531	22	2.0	22	95	0	79	18	15	45	20	1.85
60719--60812	20	4.7	20	80	2	89	23	18	24	34	1.96
60699--60813	20	5.7	20	78	5	88	23	17	23	35	1.95
60741--60875	41	3.3	41	81	4	130	20	21	20	37	1.94
60802--60894	20	4.6	20	78	4	96	18	24	18	38	1.92
60802--60897	41	2.3	41	98	0	183	18	23	17	39	1.92
61104--61184	2	40.5	2	100	0	162	50	0	0	49	1.00
64318--64578	130	2.0	130	99	0	513	40	9	14	34	1.80
76936--76975	2	20.0	2	100	0	80	50	0	0	50	1.00
76970--77008	18	2.2	18	95	4	71	53	0	0	46	1.00
82939--82979	19	2.2	19	90	0	64	12	26	36	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91626--91665	21	1.9	21	85	10	55	25	37	25	12	1.91
93779--93803	13	1.9	13	100	0	50	48	0	8	44	1.32
95402--95455	20	2.7	20	77	8	56	57	1	7	33	1.37
95771--95823	21	2.5	21	93	6	90	33	20	13	32	1.91
101556--101595	21	1.9	21	85	10	55	25	37	25	12	1.91
103709--103733	13	1.9	13	100	0	50	48	0	8	44	1.32
105338--105391	20	2.7	20	77	8	56	57	1	7	33	1.37
105708--105763	21	2.7	21	91	5	87	33	19	14	32	1.92
105890--105932	18	2.4	18	80	3	52	48	6	2	41	1.43

Tables:   1

The End!