Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006493.1 Hibiscus syriacus cultivar Beakdansim tig00015791_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75088

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14052--14195
60
2.4
59
77
5
146
31
20
15
33
1.93
16072--16156
44
1.9
44
90
4
136
48
20
5
25
1.72
16183--16277
44
2.2
44
90
0
145
43
23
7
26
1.80
16070--16516
118
3.8
118
94
0
752
40
23
7
29
1.81
16301--16395
44
2.2
44
90
0
145
42
24
5
28
1.76
16426--16513
44
2.0
44
97
0
167
42
25
7
25
1.82
20533--20557
2
12.5
2
100
0
50
52
0
48
0
1.00
21912--21941
15
2.0
15
100
0
60
26
0
0
73
0.84
23772--23816
19
2.4
19
92
3
74
11
13
8
66
1.44
27001--27578
165
3.5
165
82
3
630
29
25
21
23
1.99
26949--27567
249
2.5
249
93
1
1014
29
24
21
24
1.99
27437--27705
142
1.9
142
95
0
484
30
23
21
23
1.99
27274--27884
307
2.0
306
91
0
997
29
24
21
24
1.99
27578--28043
164
2.8
165
88
0
682
30
22
20
25
1.98
29696--29737
22
1.9
22
85
9
59
16
7
0
76
1.00
29836--29865
15
2.0
15
100
0
60
26
0
0
73
0.84
37585--37622
2
19.0
2
100
0
76
50
0
0
50
1.00
39424--39474
27
1.9
27
84
4
68
35
5
0
58
1.22
42599--42658
31
1.9
31
93
0
102
40
6
10
43
1.64
43136--43179
16
2.6
17
85
3
63
56
0
2
40
1.11
43156--43208
23
2.4
21
75
9
52
54
1
3
39
1.29
43202--43247
24
1.9
24
86
0
65
52
0
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43227--43333
12
8.7
12
67
19
60
56
1
0
42
1.10
43173--43329
64
2.5
64
90
6
250
54
1
0
43
1.16
43230--43282
26
2.2
24
78
18
58
49
1
0
49
1.12
43291--43341
12
4.3
12
76
18
54
66
1
0
31
1.03
45072--45131
30
2.0
30
93
0
102
30
5
21
43
1.74
45211--45268
21
2.8
21
100
0
116
20
36
18
24
1.95
45331--45406
21
3.7
21
94
1
127
19
32
18
28
1.96
45771--45840
34
2.1
33
86
5
97
31
15
28
24
1.96
46702--46749
19
2.5
20
82
3
62
52
6
12
29
1.63
47866--48043
89
2.0
88
98
1
347
35
14
10
38
1.81
48112--48171
30
2.0
30
90
0
93
31
5
20
43
1.73
48351--48404
20
2.7
20
91
0
81
20
31
18
29
1.96
49064--49121
21
2.8
21
100
0
116
20
36
18
24
1.95
49184--49238
20
2.7
21
94
2
94
20
34
18
27
1.95
49603--49672
34
2.1
32
86
5
95
31
15
30
22
1.95
48252--49906
844
2.0
833
97
1
3139
30
22
18
29
1.97
50999--51048
3
16.0
3
83
4
55
66
0
4
30
1.10
50999--51051
18
3.0
18
86
2
72
67
0
3
28
1.07
60125--60154
15
1.9
16
93
6
53
26
30
13
30
1.94
65638--65722
24
3.5
24
80
3
100
17
12
17
51
1.76
65638--65720
12
6.9
12
70
9
62
16
13
18
51
1.76
68482--68557
31
2.5
30
86
2
98
48
9
15
26
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68484--68557
30
2.4
31
86
2
96
48
9
14
27
1.75
68926--68995
26
2.7
26
77
4
70
48
1
5
44
1.35
72451--72505
25
2.2
25
83
9
67
58
9
7
25
1.55
72976--73007
16
2.0
16
93
0
55
53
6
0
40
1.26

Tables:   1

The End!