genome.fa.s6494.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006494.1 Hibiscus syriacus cultivar Beakdansim tig00015794_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55950

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47--100	21	2.7	20	78	13	56	53	0	0	46	1.00
174--236	26	2.3	27	81	10	76	63	4	6	25	1.38
1476--1533	19	3.2	19	79	18	70	56	0	0	43	0.99
1667--2903	76	16.5	76	94	2	2117	34	22	19	23	1.97
1667--2903	452	2.7	453	93	2	2134	34	22	19	23	1.97
3749--3803	22	2.5	22	93	0	101	40	14	10	34	1.81
4171--4326	54	2.9	54	90	0	240	21	24	17	37	1.94
6442--6661	114	1.9	113	88	0	332	30	18	16	34	1.93
10907--10945	14	2.8	14	85	11	53	58	7	17	15	1.59
13774--13828	29	2.0	29	85	7	78	50	0	0	49	1.00
13884--13925	20	2.2	19	86	4	57	64	0	0	35	0.94
13792--14017	120	1.9	117	82	4	283	44	8	8	38	1.65
14071--14106	18	1.9	18	88	5	54	52	0	0	47	1.00
14181--14244	27	2.3	27	81	7	76	64	4	6	25	1.37
15470--15546	29	2.6	30	79	18	81	51	0	0	48	1.00
24098--24470	81	4.6	81	87	2	491	28	23	12	36	1.90
26706--26762	24	2.4	24	100	0	114	35	19	14	31	1.91
26917--26966	2	25.0	2	100	0	100	50	0	0	50	1.00
27150--28005	81	10.7	81	85	3	1128	28	21	12	37	1.89
27150--28005	161	5.4	162	87	2	1137	28	21	12	37	1.89
27135--28004	242	3.6	241	87	4	1151	28	21	12	37	1.89
27805--27945	70	2.0	70	94	0	246	28	24	12	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27724--28002	151	1.8	151	91	0	459	29	22	12	35	1.90
27955--28123	68	2.5	68	90	0	257	30	24	14	30	1.94
28479--28751	58	4.7	57	90	2	397	36	19	10	32	1.87
29101--29302	95	2.1	95	88	1	298	25	24	14	35	1.94
38430--38483	23	2.3	22	84	12	72	27	1	1	68	1.10
40797--40842	10	4.5	10	78	5	56	28	6	6	58	1.48
44695--44757	29	2.1	29	83	13	76	28	14	28	28	1.95

Tables:   1

The End!