Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006495.1 Hibiscus syriacus cultivar Beakdansim tig00015796_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 107480
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:2185 original size:13 final size:13
Alignment explanation
Indices: 2167--2200 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
2157 CATATATTGA
2167 TTTTCAAACCTT-G
1 TTTTCAAA-CTTGG
2180 TTTTCAAACTTGG
1 TTTTCAAACTTGG
2193 TTTTCAAA
1 TTTTCAAA
2201 ATTGCCCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 3 0.15
13 17 0.85
ACGTcount: A:0.26, C:0.18, G:0.09, T:0.47
Consensus pattern (13 bp):
TTTTCAAACTTGG
Found at i:4398 original size:20 final size:20
Alignment explanation
Indices: 4370--4408 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
4360 TAGATTGTCC
*
4370 AGAGGGTACCGATACCCCCT
1 AGAGAGTACCGATACCCCCT
*
4390 AGAGAGTACTGATACCCCC
1 AGAGAGTACCGATACCCCC
4409 CAAGTAAGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.33, G:0.23, T:0.15
Consensus pattern (20 bp):
AGAGAGTACCGATACCCCCT
Found at i:5984 original size:18 final size:18
Alignment explanation
Indices: 5961--5996 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
5951 CCATGGTTAT
*
5961 AGAGGACATGAAAGAGGA
1 AGAGGAAATGAAAGAGGA
*
5979 AGAGGAAATGTAAGAGGA
1 AGAGGAAATGAAAGAGGA
5997 GCTGGGGTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.03, G:0.39, T:0.08
Consensus pattern (18 bp):
AGAGGAAATGAAAGAGGA
Found at i:15303 original size:19 final size:19
Alignment explanation
Indices: 15279--15316 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
15269 GAAAACCGTC
*
15279 TGCATAACTGCACGCCTAA
1 TGCATAACAGCACGCCTAA
15298 TGCATAACAGCACGCCTAA
1 TGCATAACAGCACGCCTAA
15317 CTGACTAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.32, G:0.16, T:0.18
Consensus pattern (19 bp):
TGCATAACAGCACGCCTAA
Found at i:19877 original size:19 final size:19
Alignment explanation
Indices: 19853--19890 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
19843 GAAAACCGTC
*
19853 TGCATAACTGCACGCCTAA
1 TGCATAACAGCACGCCTAA
19872 TGCATAACAGCACGCCTAA
1 TGCATAACAGCACGCCTAA
19891 CTGACTAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.32, G:0.16, T:0.18
Consensus pattern (19 bp):
TGCATAACAGCACGCCTAA
Found at i:20106 original size:19 final size:19
Alignment explanation
Indices: 20082--20119 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
20072 GAAAACCGTT
*
20082 TGCATAACTGCACGCCTAA
1 TGCATAACAGCACGCCTAA
20101 TGCATAACAGCACGCCTAA
1 TGCATAACAGCACGCCTAA
20120 CTGACTAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.32, G:0.16, T:0.18
Consensus pattern (19 bp):
TGCATAACAGCACGCCTAA
Found at i:20151 original size:229 final size:229
Alignment explanation
Indices: 19750--20210 Score: 904
Period size: 229 Copynumber: 2.0 Consensus size: 229
19740 CGAAAGATAC
*
19750 CATATTAGAAACTCAACATAAGATGTAAACTTGCAGTATATTATTCCCCCTTTACATAGCTGAGC
1 CATATTAGAAACTCAACATAAGATGTAAACTTGCAGTATATTATTCCCCCTTTACACAGCTGAGC
19815 AAGGCTGCATTTATAGCTACAAGAGTAAGAAAACCGTCTGCATAACTGCACGCCTAATGCATAAC
66 AAGGCTGCATTTATAGCTACAAGAGTAAGAAAACCGTCTGCATAACTGCACGCCTAATGCATAAC
19880 AGCACGCCTAACTGACTAACAGACTAACAGTCTGAGGTTTTGCTCACATACACTCGAGAGCACAT
131 AGCACGCCTAACTGACTAACAGACTAACAGTCTGAGGTTTTGCTCACATACACTCGAGAGCACAT
19945 TGATTATGTGCACTCTTTACACATGATCTCTCAA
196 TGATTATGTGCACTCTTTACACATGATCTCTCAA
19979 CATATTAGAAACTCAACATAAGATGTAAACTTGCAGTATATTATTCCCCCTTTACACAGCTGAGC
1 CATATTAGAAACTCAACATAAGATGTAAACTTGCAGTATATTATTCCCCCTTTACACAGCTGAGC
*
20044 AAGGCTGCATTTATAGCTACAAGAGTAAGAAAACCGTTTGCATAACTGCACGCCTAATGCATAAC
66 AAGGCTGCATTTATAGCTACAAGAGTAAGAAAACCGTCTGCATAACTGCACGCCTAATGCATAAC
20109 AGCACGCCTAACTGACTAACAGACTAACAGTCTGAGGTTTTGCTCACATACACTCGAGAGCACAT
131 AGCACGCCTAACTGACTAACAGACTAACAGTCTGAGGTTTTGCTCACATACACTCGAGAGCACAT
20174 TGATTATGTGCACTCTTTACACATGATCTCTCAA
196 TGATTATGTGCACTCTTTACACATGATCTCTCAA
20208 CAT
1 CAT
20211 TCTCCCTACT
Statistics
Matches: 230, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
229 230 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.27
Consensus pattern (229 bp):
CATATTAGAAACTCAACATAAGATGTAAACTTGCAGTATATTATTCCCCCTTTACACAGCTGAGC
AAGGCTGCATTTATAGCTACAAGAGTAAGAAAACCGTCTGCATAACTGCACGCCTAATGCATAAC
AGCACGCCTAACTGACTAACAGACTAACAGTCTGAGGTTTTGCTCACATACACTCGAGAGCACAT
TGATTATGTGCACTCTTTACACATGATCTCTCAA
Found at i:23655 original size:36 final size:38
Alignment explanation
Indices: 23563--23692 Score: 149
Period size: 38 Copynumber: 3.5 Consensus size: 38
23553 ACACATACAT
* * * **
23563 ATATATTATATAG-TTTGAAAACATGTTTGAAAGCGTTT
1 ATATATTATATAGTTTTTAAAACAT-TTTGAAAACATAA
*
23601 ATATATTATATTGTTTTTAAAACATTTT-AAAA-ATAA
1 ATATATTATATAGTTTTTAAAACATTTTGAAAACATAA
* * *
23637 ATATAATATATAGCTTTTAAAACATTTTGAAAACATAT
1 ATATATTATATAGTTTTTAAAACATTTTGAAAACATAA
23675 ATATATTATATAGTTTTT
1 ATATATTATATAGTTTTT
23693 TGAAAATATA
Statistics
Matches: 77, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
36 26 0.34
37 7 0.09
38 34 0.44
39 10 0.13
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (38 bp):
ATATATTATATAGTTTTTAAAACATTTTGAAAACATAA
Found at i:23723 original size:25 final size:25
Alignment explanation
Indices: 23673--23723 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
23663 TTGAAAACAT
**
23673 ATATATATTATATAGTTTTTTGAAA
1 ATATATATTATATAGTTTTTAAAAA
23698 ATATATATTATATAGTTTTTAAAAA
1 ATATATATTATATAGTTTTTAAAAA
23723 A
1 A
23724 ACATTTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (25 bp):
ATATATATTATATAGTTTTTAAAAA
Found at i:23804 original size:9 final size:10
Alignment explanation
Indices: 23763--23815 Score: 51
Period size: 9 Copynumber: 5.7 Consensus size: 10
23753 TTTTTGAAAA
23763 TATTT-TTAT
1 TATTTATTAT
* *
23772 AATATATTAT
1 TATTTATTAT
23782 TA-TTATTAT
1 TATTTATTAT
23791 TATTTATT-T
1 TATTTATTAT
*
23800 TATTTCTTAT
1 TATTTATTAT
23810 T-TTTAT
1 TATTTAT
23816 GTTTTGTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
9 23 0.66
10 12 0.34
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (10 bp):
TATTTATTAT
Found at i:24856 original size:19 final size:19
Alignment explanation
Indices: 24832--24880 Score: 91
Period size: 18 Copynumber: 2.6 Consensus size: 19
24822 CTAATGTGAA
24832 TTAATTTTTTTTTCAAAAT
1 TTAATTTTTTTTTCAAAAT
24851 TTAA-TTTTTTTTCAAAAT
1 TTAATTTTTTTTTCAAAAT
24869 TTAATTTTTTTT
1 TTAATTTTTTTT
24881 ATTTTTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
18 18 0.62
19 11 0.38
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (19 bp):
TTAATTTTTTTTTCAAAAT
Found at i:24892 original size:22 final size:24
Alignment explanation
Indices: 24867--24916 Score: 77
Period size: 22 Copynumber: 2.2 Consensus size: 24
24857 TTTTTTCAAA
*
24867 ATTTAATTTTTTTTAT-TT-TTTT
1 ATTTAATTTTTTTAATGTTCTTTT
24889 ATTTAATTTTTTTAATGTTCTTTT
1 ATTTAATTTTTTTAATGTTCTTTT
24913 ATTT
1 ATTT
24917 TTACCATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 15 0.60
23 2 0.08
24 8 0.32
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (24 bp):
ATTTAATTTTTTTAATGTTCTTTT
Found at i:32793 original size:16 final size:16
Alignment explanation
Indices: 32772--32809 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
32762 GAGTGTGAGT
32772 GCATCTAAACATTCGC
1 GCATCTAAACATTCGC
*
32788 GCATCTAAACGTTCGC
1 GCATCTAAACATTCGC
32804 GCATCT
1 GCATCT
32810 CCCGTTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (16 bp):
GCATCTAAACATTCGC
Found at i:35780 original size:21 final size:21
Alignment explanation
Indices: 35754--35794 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
35744 AAGGGGTATC
*
35754 GATGCACCTTGATATTATACT
1 GATGCACCTTAATATTATACT
35775 GATGCACCTTAATATTATAC
1 GATGCACCTTAATATTATAC
35795 CGATACACTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (21 bp):
GATGCACCTTAATATTATACT
Found at i:37174 original size:104 final size:104
Alignment explanation
Indices: 36994--37199 Score: 394
Period size: 104 Copynumber: 2.0 Consensus size: 104
36984 ACCACGTGCT
*
36994 CCCTACAATCAACGAGGCTTCCTTTGGTGAGCCAACAATTTTTCTTGAAAAATTCGGAGAGAACT
1 CCCTACAATCAACGAGGCTTCCTTTGGTGAGCCAACAATTTTTCTTGAAAAATTCGAAGAGAACT
37059 AAATATAGCATTCCTCTCCTCCAAAGCTTAAGTTTCTGA
66 AAATATAGCATTCCTCTCCTCCAAAGCTTAAGTTTCTGA
*
37098 CCCTACAATCAACGAGGCTTCCTTTGGTGAGCCAACAATTTTTCTTGAAAAATTCTAAGAGAACT
1 CCCTACAATCAACGAGGCTTCCTTTGGTGAGCCAACAATTTTTCTTGAAAAATTCGAAGAGAACT
37163 AAATATAGCATTCCTCTCCTCCAAAGCTTAAGTTTCT
66 AAATATAGCATTCCTCTCCTCCAAAGCTTAAGTTTCT
37200 AACACCCTTC
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
104 100 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (104 bp):
CCCTACAATCAACGAGGCTTCCTTTGGTGAGCCAACAATTTTTCTTGAAAAATTCGAAGAGAACT
AAATATAGCATTCCTCTCCTCCAAAGCTTAAGTTTCTGA
Found at i:41718 original size:16 final size:17
Alignment explanation
Indices: 41689--41722 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
41679 TCAAAGGAGG
41689 AAAAAATGATAATAAAGA
1 AAAAAATGA-AATAAAGA
41707 AAAAAATG-AATAAAGA
1 AAAAAATGAAATAAAGA
41723 GGAAAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.15
Consensus pattern (17 bp):
AAAAAATGAAATAAAGA
Found at i:41719 original size:19 final size:18
Alignment explanation
Indices: 41689--41732 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
41679 TCAAAGGAGG
41689 AAAAAATGATAATA-AAGA
1 AAAAAATGATAA-AGAAGA
*
41707 AAAAAATGAATAAAGAGGA
1 AAAAAATG-ATAAAGAAGA
41726 AAAAAAT
1 AAAAAAT
41733 ATTAAATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.73, C:0.00, G:0.14, T:0.14
Consensus pattern (18 bp):
AAAAAATGATAAAGAAGA
Found at i:41728 original size:18 final size:19
Alignment explanation
Indices: 41685--41730 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
41675 TAAATCAAAG
41685 GAGGAAAAAATGATAATAAA
1 GAGGAAAAAATGA-AATAAA
41705 GA--AAAAAATG-AATAAA
1 GAGGAAAAAATGAAATAAA
41721 GAGGAAAAAA
1 GAGGAAAAAA
41731 ATATTAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
16 8 0.33
18 14 0.58
20 2 0.08
ACGTcount: A:0.70, C:0.00, G:0.20, T:0.11
Consensus pattern (19 bp):
GAGGAAAAAATGAAATAAA
Found at i:41758 original size:13 final size:14
Alignment explanation
Indices: 41740--41773 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
41730 AATATTAAAT
41740 AAATAAAAACAA-A
1 AAATAAAAACAATA
*
41753 AAATAAAAATAATA
1 AAATAAAAACAATA
41767 AAATAAA
1 AAATAAA
41774 TTTAAGGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (14 bp):
AAATAAAAACAATA
Found at i:41762 original size:23 final size:23
Alignment explanation
Indices: 41726--41769 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
41716 ATAAAGAGGA
*
41726 AAAAAATATTAAATAAATAAAAAC
1 AAAAAATATAAAAT-AATAAAAAC
41750 AAAAAATA-AAAATAATAAAA
1 AAAAAATATAAAATAATAAAA
41770 TAAATTTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 4 0.21
24 8 0.42
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (23 bp):
AAAAAATATAAAATAATAAAAAC
Found at i:43127 original size:12 final size:12
Alignment explanation
Indices: 43110--43160 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
43100 TACACAAAAT
*
43110 TAATAAAACGAA
1 TAATAAAACAAA
43122 TAATAAAA-ATAA
1 TAATAAAACA-AA
*
43134 AAATAAAACAAA
1 TAATAAAACAAA
43146 TAATAAAAACAAA
1 TAAT-AAAACAAA
43159 TA
1 TA
43161 TATATTATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
12 22 0.67
13 11 0.33
ACGTcount: A:0.75, C:0.06, G:0.02, T:0.18
Consensus pattern (12 bp):
TAATAAAACAAA
Found at i:43289 original size:71 final size:70
Alignment explanation
Indices: 43213--43367 Score: 195
Period size: 71 Copynumber: 2.2 Consensus size: 70
43203 TTTTTCAAAC
* *
43213 TATATAATATATACTTTCAAAAAAAGCTTTGAAAAAATATGTATTATA-TGTTTCCAAAATATTT
1 TATATAATATATA-TTTCAAAAAAAG-TTTGAAAAAATATATATTATATTATTTCCAAAATATTT
43277 TAAAAAT
64 TAAAAAT
** * * * * *
43284 TATATAATATATATTTTTAAAAATGTTTTAAAAATTATATATTATATTTATTTTCAAAATGTTTT
1 TATATAATATATATTTCAAAAAAAGTTTGAAAAAATATATATTATA-TTATTTCCAAAATATTTT
43349 AAAAAT
65 AAAAAT
43355 TATATAATATATA
1 TATATAATATATA
43368 AATATTTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
69 18 0.25
70 9 0.12
71 46 0.63
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (70 bp):
TATATAATATATATTTCAAAAAAAGTTTGAAAAAATATATATTATATTATTTCCAAAATATTTTA
AAAAT
Found at i:43336 original size:37 final size:37
Alignment explanation
Indices: 43268--43523 Score: 211
Period size: 38 Copynumber: 6.9 Consensus size: 37
43258 ATATGTTTCC
*
43268 AAAATATTTTAAAAATTATATA--ATATATATTTTTA
1 AAAATGTTTTAAAAATTATATATTATATATATTTTTA
* *
43303 AAAATGTTTTAAAAATTATATATTATATTTA-TTTTC
1 AAAATGTTTTAAAAATTATATATTATATATATTTTTA
* *
43339 AAAATGTTTTAAAAATTATATAATATATAAATATTTTCA
1 AAAATGTTTTAAAAATTATAT-AT-TATATATATTTTTA
* * * *
43378 AACATGTTTTCAAAACTATATATTATATATATATTTA
1 AAAATGTTTTAAAAATTATATATTATATATATTTTTA
* * * *
43415 AAAATGGTTTCAAAAATCATATAATATACT-TATTTTCGA
1 AAAAT-GTTTTAAAAATTATATATTATA-TATATTTT-TA
* * * *
43454 AAACTGATTTCTAGAAATTATATACTATAT-T-TTTCTA
1 AAAATG-TTT-TAAAAATTATATATTATATATATTTTTA
* *
43491 AAACAT-TTTCAAAGATTATATATATATATATAT
1 AAA-ATGTTTTAAAAATTATATAT-TATATATAT
43524 AAAGCAAATA
Statistics
Matches: 174, Mismatches: 33, Indels: 25
0.75 0.14 0.11
Matches are distributed among these distances:
35 31 0.18
36 33 0.19
37 28 0.16
38 36 0.21
39 32 0.18
40 14 0.08
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (37 bp):
AAAATGTTTTAAAAATTATATATTATATATATTTTTA
Found at i:43442 original size:75 final size:72
Alignment explanation
Indices: 43213--43523 Score: 224
Period size: 75 Copynumber: 4.2 Consensus size: 72
43203 TTTTTCAAAC
* * * * * * **
43213 TATATAATAT-ATACTTTCAAAAAAAGCTTTGAAAAAATATGTATTATATGT-TTCCAAAATAT-
1 TATATAATATAATATTTTC-AAAAATG-TTTTAAAAACTATATATTATATATATTTTAAAA-ATG
43275 TTT-AAAAAT
63 TTTCAAAAAT
* * * *
43284 TATATAATAT-ATATTTTTAAAAATGTTTTAAAAATTATATATTATATTTATTTTCAAAATGTTT
1 TATATAATATAATATTTTCAAAAATGTTTTAAAAACTATATATTATATATATTTTAAAAATGTTT
*
43348 TAAAAAT
66 CAAAAAT
* *
43355 TATATAATATATAAATATTTTCAAACATGTTTTCAAAACTATATATTATATATATATTTAAAAAT
1 TATAT-A-ATAT-AATATTTTCAAAAATGTTTTAAAAACTATATATTATATATAT-TTTAAAAAT
43420 GGTTTCAAAAAT
62 -GTTTCAAAAAT
* * * * * *
43432 CATATAATATACTTATTTTCGAAAACTGATTTCTAGAAATTATATACTATAT-T-TTTCTAAAAC
1 TATATAATATA-ATATTTTC-AAAAATG-TTT-TAAAAACTATATATTATATATATTT-TAAAA-
*
43495 AT-TTTCAAAGAT
60 ATGTTTCAAAAAT
43507 TATATATATATATATAT
1 TATATA-ATATA-ATAT
43524 AAAGCAAATA
Statistics
Matches: 195, Mismatches: 29, Indels: 27
0.78 0.12 0.11
Matches are distributed among these distances:
69 22 0.11
70 14 0.07
71 27 0.14
72 1 0.01
73 4 0.02
74 1 0.01
75 63 0.32
76 28 0.14
77 20 0.10
78 15 0.08
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.44
Consensus pattern (72 bp):
TATATAATATAATATTTTCAAAAATGTTTTAAAAACTATATATTATATATATTTTAAAAATGTTT
CAAAAAT
Found at i:46833 original size:12 final size:12
Alignment explanation
Indices: 46812--46843 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
46802 CCATTTTAAA
*
46812 ATTATTATTATT
1 ATTATAATTATT
46824 ATTATAATTATT
1 ATTATAATTATT
46836 ATTATAAT
1 ATTATAAT
46844 AATAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTATAATTATT
Found at i:48258 original size:2 final size:2
Alignment explanation
Indices: 48251--48275 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
48241 ATATCTTATT
48251 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
48276 TTACTTCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:49890 original size:15 final size:17
Alignment explanation
Indices: 49870--49907 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
49860 TAGGTTTGGG
49870 TCGGGTT-GGG-TCAGC
1 TCGGGTTAGGGTTCAGC
*
49885 TCGGGTTAGGGTTTAGC
1 TCGGGTTAGGGTTCAGC
49902 TCGGGT
1 TCGGGT
49908 CTATTGAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 7 0.35
16 3 0.15
17 10 0.50
ACGTcount: A:0.08, C:0.16, G:0.45, T:0.32
Consensus pattern (17 bp):
TCGGGTTAGGGTTCAGC
Found at i:51016 original size:3 final size:3
Alignment explanation
Indices: 50996--51040 Score: 63
Period size: 3 Copynumber: 14.3 Consensus size: 3
50986 TTTATTTAAT
*
50996 TAA TAA AAA TAGA TAA TAA TAA TAA TAA TAA TAA TAAA TAA TAA T
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA T
51041 TCATTCACTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
3 32 0.84
4 6 0.16
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:51023 original size:22 final size:22
Alignment explanation
Indices: 50996--51040 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
50986 TTTATTTAAT
50996 TAATAAAAATAGAT-AATAATAA
1 TAATAAAAATA-ATAAATAATAA
*
51018 TAATAATAATAATAAATAATAA
1 TAATAAAAATAATAAATAATAA
51040 T
1 T
51041 TCATTCACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (22 bp):
TAATAAAAATAATAAATAATAA
Found at i:51170 original size:16 final size:16
Alignment explanation
Indices: 51158--51213 Score: 103
Period size: 16 Copynumber: 3.5 Consensus size: 16
51148 TTAGGTTAAT
51158 TTCGGTTCGGGTTGAC
1 TTCGGTTCGGGTTGAC
*
51174 TTCGGTTCGAGTTGAC
1 TTCGGTTCGGGTTGAC
51190 TTCGGTTCGGGTTGAC
1 TTCGGTTCGGGTTGAC
51206 TTCGGTTC
1 TTCGGTTC
51214 AATTATAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.07, C:0.20, G:0.34, T:0.39
Consensus pattern (16 bp):
TTCGGTTCGGGTTGAC
Found at i:51226 original size:32 final size:32
Alignment explanation
Indices: 51158--51226 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 32
51148 TTAGGTTAAT
* *
51158 TTCGGTTCGGGTTGACTTCGGTTCGAGTTGAC
1 TTCGGTTCGGGTTGACTTCGGTTCGAATTGAA
*
51190 TTCGGTTCGGGTTGACTTCGGTTC-AATTATAA
1 TTCGGTTCGGGTTGACTTCGGTTCGAATT-GAA
51222 TTCGG
1 TTCGG
51227 ATCGATTAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 3 0.09
32 30 0.91
ACGTcount: A:0.13, C:0.17, G:0.30, T:0.39
Consensus pattern (32 bp):
TTCGGTTCGGGTTGACTTCGGTTCGAATTGAA
Found at i:59771 original size:21 final size:21
Alignment explanation
Indices: 59745--59784 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
59735 CAAAACCCCA
*
59745 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
59766 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
59785 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:59793 original size:23 final size:21
Alignment explanation
Indices: 59767--59824 Score: 75
Period size: 23 Copynumber: 2.8 Consensus size: 21
59757 TTCCCCTGTG
59767 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTTCCCC-TC-AA
59790 GGGGGAATCGGTT-CCCTCAA
1 GGGGGAATCGGTTCCCCTCAA
*
59810 GGGGG-ATCGATTCCC
1 GGGGGAATCGGTTCCC
59825 TCTGCACCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
19 6 0.18
20 9 0.27
21 2 0.06
22 3 0.09
23 13 0.39
ACGTcount: A:0.19, C:0.26, G:0.34, T:0.21
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCCTCAA
Found at i:62153 original size:19 final size:19
Alignment explanation
Indices: 62129--62167 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
62119 TCGAATGCAT
62129 TCCATGCACCGATGCACTC
1 TCCATGCACCGATGCACTC
*
62148 TCCATGCATCGATGCACTC
1 TCCATGCACCGATGCACTC
62167 T
1 T
62168 GAATATTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.38, G:0.15, T:0.26
Consensus pattern (19 bp):
TCCATGCACCGATGCACTC
Found at i:62269 original size:64 final size:65
Alignment explanation
Indices: 62114--62275 Score: 211
Period size: 65 Copynumber: 2.5 Consensus size: 65
62104 TGAATTAATT
* * *** *
62114 AAACATCGAATGCATTCCATGCACCGATGCACTCTCCATGCATCGATGCACTCTGAATATTTTCA
1 AAACATCGAATGCATTTCATGCATCGATGCACAAGCCATGCATCGATGCACTCAGAATATTTTCA
* **
62179 AAACATCGAATGCATTTGATGCATCGATGCACAAGCCATGCATCGATGCA-TCAGGCTATTTTTC
1 AAACATCGAATGCATTTCATGCATCGATGCACAAGCCATGCATCGATGCACTCAGAATA-TTTTC
62243 -
65 A
*
62243 AAACATTGAATGCATTTCATGCATCGATGCACA
1 AAACATCGAATGCATTTCATGCATCGATGCACA
62276 TTTGGTGCAC
Statistics
Matches: 85, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
64 36 0.42
65 49 0.58
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (65 bp):
AAACATCGAATGCATTTCATGCATCGATGCACAAGCCATGCATCGATGCACTCAGAATATTTTCA
Found at i:68093 original size:20 final size:21
Alignment explanation
Indices: 68064--68120 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
68054 TTTGTGCTTC
*
68064 ATGCACCGATGCAT-TT-AACA
1 ATGCATCGATGCATATTGAA-A
*
68084 ATGCATCGATGCATCATTGAAT
1 ATGCATCGATGCAT-ATTGAAA
68106 ATGCATCGATGCATA
1 ATGCATCGATGCATA
68121 AGACCATGCA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 13 0.41
21 1 0.03
22 16 0.50
23 2 0.06
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (21 bp):
ATGCATCGATGCATATTGAAA
Found at i:69698 original size:21 final size:21
Alignment explanation
Indices: 69656--69699 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
69646 ACCCCGGGAG
*
69656 CTAGTTCTTCACGAGCTGCTC
1 CTAGTTCTTCACGAGCTCCTC
*
69677 CTAGTTCTT-ATCGTGCTCCTC
1 CTAGTTCTTCA-CGAGCTCCTC
69698 CT
1 CT
69700 CCTCCTCCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.11, C:0.34, G:0.16, T:0.39
Consensus pattern (21 bp):
CTAGTTCTTCACGAGCTCCTC
Found at i:70764 original size:19 final size:19
Alignment explanation
Indices: 70740--70778 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
70730 TCGAATGCAT
70740 TCCATGCACCGATGCACTC
1 TCCATGCACCGATGCACTC
**
70759 TCCATGCATTGATGCACTC
1 TCCATGCACCGATGCACTC
70778 T
1 T
70779 GAATATTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.21, C:0.36, G:0.15, T:0.28
Consensus pattern (19 bp):
TCCATGCACCGATGCACTC
Found at i:70794 original size:65 final size:64
Alignment explanation
Indices: 70698--70886 Score: 213
Period size: 65 Copynumber: 2.9 Consensus size: 64
70688 GCATCAGTCT
** * * ***
70698 ATGCATCGATGCATCGATGAAT-TAATT-AAACATCGAATGCATTCCATGCACCGATGCACTCTC
1 ATGCATCGATGCATC-A-GAATATTTTTCAAACATCGAATGCATTTCATGCATCGATGCACAAGC
70761 C
64 C
* * *
70762 ATGCATTGATGCACTCTGAATA-TTTTCAAAACATCGAATGCATTTGATGCATCGATGCACAAGC
1 ATGCATCGATGCA-TCAGAATATTTTTC-AAACATCGAATGCATTTCATGCATCGATGCACAAGC
70826 C
64 C
**
70827 ATGCATCGATGCATCAGGCTATTTTTCAAACATCGAATGCATTTCATGCATCGATGCACA
1 ATGCATCGATGCATCAGAATATTTTTCAAACATCGAATGCATTTCATGCATCGATGCACA
70887 CTTGGTGCAC
Statistics
Matches: 105, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
63 6 0.06
64 49 0.47
65 50 0.48
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (64 bp):
ATGCATCGATGCATCAGAATATTTTTCAAACATCGAATGCATTTCATGCATCGATGCACAAGCC
Found at i:70901 original size:64 final size:64
Alignment explanation
Indices: 70677--70906 Score: 216
Period size: 64 Copynumber: 3.6 Consensus size: 64
70667 TATTCAAAGG
* * * *
70677 CATGCACCGATGCATCAGTCTATGCATCGATGCATCGATGAAT-TAATT--AAACATCGAATGCA
1 CATGCATCGATGCA-CACTCCATGCATCGATGCATC-A-GAATAT-TTTCAAAACATCGAATGCA
*
70739 TTC
62 TTT
* * * *
70742 CATGCACCGATGCACTCTCCATGCATTGATGCACTCTGAATATTTTCAAAACATCGAATGCATTT
1 CATGCATCGATGCACACTCCATGCATCGATGCA-TCAGAATATTTTCAAAACATCGAATGCATTT
* ** **
70807 GATGCATCGATGCACAAGCCATGCATCGATGCATCAGGCTATTTTTC-AAACATCGAATGCATTT
1 CATGCATCGATGCACACTCCATGCATCGATGCATCAGAATA-TTTTCAAAACATCGAATGCATTT
*** *
70871 CATGCATCGATGCACACTTGGTGCACCGATGCATCA
1 CATGCATCGATGCACACTCCATGCATCGATGCATCA
70907 AGTGTTCCAA
Statistics
Matches: 137, Mismatches: 23, Indels: 11
0.80 0.13 0.06
Matches are distributed among these distances:
63 6 0.04
64 67 0.49
65 64 0.47
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (64 bp):
CATGCATCGATGCACACTCCATGCATCGATGCATCAGAATATTTTCAAAACATCGAATGCATTT
Found at i:85738 original size:21 final size:22
Alignment explanation
Indices: 85714--85759 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
85704 TAATTACTTT
85714 AAAAATAAT-TATCAAAA-TATA
1 AAAAAT-ATCTATCAAAATTATA
*
85735 AAAAATATCTATTAAAATTATA
1 AAAAATATCTATCAAAATTATA
85757 AAA
1 AAA
85760 TATTTTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 2 0.09
21 13 0.59
22 7 0.32
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAAATATCTATCAAAATTATA
Found at i:90359 original size:60 final size:60
Alignment explanation
Indices: 90280--90439 Score: 180
Period size: 60 Copynumber: 2.7 Consensus size: 60
90270 AATTTGGGAT
* * * *
90280 AAAAGTTT-AGGGACTAATTTAGAATGAGATTCATAGTTTGGGGATGAAATTCGAATGTTA
1 AAAAGTTTAAGGG-CTAATTTAGAATGAGAGTCATAGTTTAGAGATGAAATTCGAATATTA
* * * * *
90340 AAAATTTTAAGGGCTAATTTAGAATGAGAGTCATTA-TTTATATATGAAATTGGAATATTT
1 AAAAGTTTAAGGGCTAATTTAGAATGAGAGTCA-TAGTTTAGAGATGAAATTCGAATATTA
* * *
90400 AAAAGTTTAAGGACTAATTTAAAATGATAGTCATAGTTTA
1 AAAAGTTTAAGGGCTAATTTAGAATGAGAGTCATAGTTTA
90440 AGGACATATG
Statistics
Matches: 84, Mismatches: 13, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
59 2 0.02
60 76 0.90
61 6 0.07
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.36
Consensus pattern (60 bp):
AAAAGTTTAAGGGCTAATTTAGAATGAGAGTCATAGTTTAGAGATGAAATTCGAATATTA
Found at i:92490 original size:2 final size:2
Alignment explanation
Indices: 92483--92527 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
92473 GAAACTAGTT
92483 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
92525 TA T
1 TA T
92528 TCCGTACTTG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:92875 original size:5 final size:5
Alignment explanation
Indices: 92865--92889 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
92855 TAAACTGTTG
92865 AAGAA AAGAA AAGAA AAGAA AAGAA
1 AAGAA AAGAA AAGAA AAGAA AAGAA
92890 GCAACTAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAGAA
Found at i:96402 original size:21 final size:19
Alignment explanation
Indices: 96370--96408 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
96360 TAATCTTAAT
96370 TTTAATTCAATTAAATGAA
1 TTTAATTCAATTAAATGAA
*
96389 TTTAATCTCTAATTAGATGA
1 TTTAAT-TC-AATTAAATGA
96409 TGACAATTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 2 0.12
21 9 0.53
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.44
Consensus pattern (19 bp):
TTTAATTCAATTAAATGAA
Found at i:97330 original size:20 final size:20
Alignment explanation
Indices: 97305--97376 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
97295 CGATGTTGCC
*
97305 TGGTATCGATACCCTTACCA
1 TGGTATCGATACCCCTACCA
**
97325 TGGTATCGATACTACCCTATTA
1 TGGTATCGATAC--CCCTACCA
97347 TGGTATCGATACCCCTACC-
1 TGGTATCGATACCCCTACCA
97366 -GGTATCGATAC
1 TGGTATCGATAC
97377 AAAATTATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
18 11 0.24
20 17 0.38
22 17 0.38
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.31
Consensus pattern (20 bp):
TGGTATCGATACCCCTACCA
Found at i:97349 original size:94 final size:94
Alignment explanation
Indices: 97251--97434 Score: 226
Period size: 94 Copynumber: 2.0 Consensus size: 94
97241 ACTTCTATAC
*** * * * *
97251 TATGGTACCGATACCCCTTTGGGTATCGATACCAAAAATAGGTTCGATGTTGCCTGGTATCGATA
1 TATGGTACCGATACCCCTACCGGTATCGATA-CAAAAATAGATTCGAAGTTGCCTAGTAACGATA
* *
97316 C-CCTTACCATGGTATCGATACTACCCTAT
65 CTCCTTACCATGGTAACAATACTACCCTAT
* * * *
97345 TATGGTATCGATACCCCTACCGGTATCGATACAAAATTATATTCGAAGTTGCTTAGTAACGATAC
1 TATGGTACCGATACCCCTACCGGTATCGATACAAAAATAGATTCGAAGTTGCCTAGTAACGATAC
*
97410 TCCTTATCATGGTAACAATACTACC
66 TCCTTACCATGGTAACAATACTACC
97435 TCATCGGTAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
93 27 0.36
94 48 0.64
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (94 bp):
TATGGTACCGATACCCCTACCGGTATCGATACAAAAATAGATTCGAAGTTGCCTAGTAACGATAC
TCCTTACCATGGTAACAATACTACCCTAT
Found at i:101465 original size:596 final size:596
Alignment explanation
Indices: 100333--101514 Score: 2330
Period size: 596 Copynumber: 2.0 Consensus size: 596
100323 ACATCCAAAT
100333 ACCTAAATTAAGACTATTTCATCTGGAGTACACGATGTAATAACATCATTATTGTACGACGTCAA
1 ACCTAAATTAAGACTATTTCATCTGGAGTACACGATGTAATAACATCATTATTGTACGACGTCAA
*
100398 CAAGAACTACATTTTTTAATCTAAGTTAGATAATTTCAAATTAAGGAATGATTTTTAAATTAAAA
66 CAAGAACTACATTTTTTAATCTAAGTTAGATAATTTCAAATAAAGGAATGATTTTTAAATTAAAA
100463 ATAAAATCGATTACGATTATTACATCATCTGCCATCTTATTGATCAACAATCTAAAATCACGCAG
131 ATAAAATCGATTACGATTATTACATCATCTGCCATCTTATTGATCAACAATCTAAAATCACGCAG
100528 AGTTTTTGGTAGGTGTGTGTGAATTAATGTACCAATCCACCTATCATTTATATAATTAAATATAA
196 AGTTTTTGGTAGGTGTGTGTGAATTAATGTACCAATCCACCTATCATTTATATAATTAAATATAA
100593 TTATTTGTCATGTTATAAAAACATATAATAATTTAAATATATAAACTAGTTTATTTTTAATTACC
261 TTATTTGTCATGTTATAAAAACATATAATAATTTAAATATATAAACTAGTTTATTTTTAATTACC
100658 TCGGAAGTAGTGGAAATTGAAATGGGGTGGGTTCTTTAAGAATTAGGCATAAAAAGGGCATTCGG
326 TCGGAAGTAGTGGAAATTGAAATGGGGTGGGTTCTTTAAGAATTAGGCATAAAAAGGGCATTCGG
100723 AACCAAACCTACGATTGCAACAACAGATACCCTCCAATAACTTGTTTGCCTAGATCGATGGCTTT
391 AACCAAACCTACGATTGCAACAACAGATACCCTCCAATAACTTGTTTGCCTAGATCGATGGCTTT
100788 AGAAAGCTCCCGAAATAGAAAGGCCAACATTATCGATCTCAACTCATATTTTTCAAATCCCACAA
456 AGAAAGCTCCCGAAATAGAAAGGCCAACATTATCGATCTCAACTCATATTTTTCAAATCCCACAA
100853 AAATATGTAGATAATACAACCACATGAGATGCACTAATAAAATATGAGCATGTGCAAATCACTGA
521 AAATATGTAGATAATACAACCACATGAGATGCACTAATAAAATATGAGCATGTGCAAATCACTGA
100918 AGTACAATGAG
586 AGTACAATGAG
100929 ACCTAAATTAAGACCTATTTCATCTGGAGTACACGATGTAATAACATCATTATTGTACGACGTCA
1 ACCTAAATTAAGA-CTATTTCATCTGGAGTACACGATGTAATAACATCATTATTGTACGACGTCA
100994 ACAAGAACTACATTTTTTAATCTAAGTTAGATAATTTCAAATAAAGGAATGATTTTTAAATTAAA
65 ACAAGAACTACATTTTTTAATCTAAGTTAGATAATTTCAAATAAAGGAATGATTTTTAAATTAAA
*
101059 AATAAAATCGATTACGATTATTACATCATCTGTCATCTTATTGATCAACAATCTAAAATCACGCA
130 AATAAAATCGATTACGATTATTACATCATCTGCCATCTTATTGATCAACAATCTAAAATCACGCA
101124 GAGTTTTTGGTAGGTGTGTGTGAATTAATGTACCAATCCACCTATCATTTATATAATTAAATATA
195 GAGTTTTTGGTAGGTGTGTGTGAATTAATGTACCAATCCACCTATCATTTATATAATTAAATATA
101189 ATTATTTGTCATGTTAT-AAAACATATAATAATTTAAATATATAAACTAGTTTATTTTTAATTAC
260 ATTATTTGTCATGTTATAAAAACATATAATAATTTAAATATATAAACTAGTTTATTTTTAATTAC
101253 CTCGGAAGTAGTGGAAATTGAAATGGGGTGGGTTCTTTAAGAATTAGGCATAAAAAGGGCATTCG
325 CTCGGAAGTAGTGGAAATTGAAATGGGGTGGGTTCTTTAAGAATTAGGCATAAAAAGGGCATTCG
101318 GAACCAAACCTACGATTGCAACAACAGATACCCTCCAATAACTTGTTTGCCTAGATCGATGGCTT
390 GAACCAAACCTACGATTGCAACAACAGATACCCTCCAATAACTTGTTTGCCTAGATCGATGGCTT
101383 TAGAAAGCTCCCGAAATAGAAAGGCCAACATTATCGATCTCAACTCATATTTTTCAAATCCCACA
455 TAGAAAGCTCCCGAAATAGAAAGGCCAACATTATCGATCTCAACTCATATTTTTCAAATCCCACA
101448 AAAATATGTAGATAATACAACCACATGAGATGCACTAATAAAATATGAGCATGTGCAAATCACTG
520 AAAATATGTAGATAATACAACCACATGAGATGCACTAATAAAATATGAGCATGTGCAAATCACTG
101513 AA
585 AA
101515 AAATAAAAAA
Statistics
Matches: 583, Mismatches: 2, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
596 322 0.55
597 261 0.45
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (596 bp):
ACCTAAATTAAGACTATTTCATCTGGAGTACACGATGTAATAACATCATTATTGTACGACGTCAA
CAAGAACTACATTTTTTAATCTAAGTTAGATAATTTCAAATAAAGGAATGATTTTTAAATTAAAA
ATAAAATCGATTACGATTATTACATCATCTGCCATCTTATTGATCAACAATCTAAAATCACGCAG
AGTTTTTGGTAGGTGTGTGTGAATTAATGTACCAATCCACCTATCATTTATATAATTAAATATAA
TTATTTGTCATGTTATAAAAACATATAATAATTTAAATATATAAACTAGTTTATTTTTAATTACC
TCGGAAGTAGTGGAAATTGAAATGGGGTGGGTTCTTTAAGAATTAGGCATAAAAAGGGCATTCGG
AACCAAACCTACGATTGCAACAACAGATACCCTCCAATAACTTGTTTGCCTAGATCGATGGCTTT
AGAAAGCTCCCGAAATAGAAAGGCCAACATTATCGATCTCAACTCATATTTTTCAAATCCCACAA
AAATATGTAGATAATACAACCACATGAGATGCACTAATAAAATATGAGCATGTGCAAATCACTGA
AGTACAATGAG
Done.