genome.fa.s6497.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006497.1 Hibiscus syriacus cultivar Beakdansim tig00015808_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126740

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4321--4485	20	9.0	20	69	17	90	34	5	13	46	1.66
4320--4464	53	2.8	52	94	2	254	33	5	13	47	1.66
12129--12178	2	25.0	2	100	0	100	50	0	0	50	1.00
17447--17582	63	2.2	62	86	4	200	48	8	7	36	1.61
25163--25209	22	2.1	22	84	7	60	38	0	2	59	1.09
30504--30529	3	8.7	3	100	0	52	30	0	0	69	0.89
32494--32537	21	2.1	21	87	8	63	34	18	22	25	1.96
33861--33975	60	1.9	60	87	3	169	25	19	24	31	1.98
34830--35041	20	10.5	20	78	4	174	36	23	18	21	1.95
34848--35043	41	4.8	41	85	5	222	36	23	18	20	1.95
34830--35044	40	5.3	41	83	3	242	37	23	18	20	1.94
35808--35906	19	5.1	19	82	4	117	45	17	23	14	1.84
35913--35994	33	2.5	33	87	2	110	12	23	23	41	1.87
35958--36016	20	3.0	20	80	9	66	11	23	20	44	1.85
36557--36771	20	10.7	20	76	8	168	19	17	24	39	1.92
36853--36907	20	2.8	19	75	8	65	20	18	29	32	1.96
37394--37432	21	1.9	21	89	5	62	53	10	5	30	1.56
56130--56173	3	14.7	3	100	0	88	34	0	0	65	0.93
56169--56200	11	2.8	11	95	4	55	56	0	0	43	0.99
56637--56675	19	2.1	19	90	9	62	66	7	25	0	1.18
56638--56708	15	4.5	16	73	7	56	67	9	22	0	1.20
57632--57678	14	3.5	13	80	13	51	40	2	2	55	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58314--58357	19	2.3	19	84	7	54	31	6	0	61	1.22
58306--58372	30	2.2	30	82	10	75	32	7	0	59	1.25
65386--65799	83	5.0	83	97	0	785	27	14	22	35	1.93
66634--67849	230	5.3	227	89	4	1798	37	12	19	29	1.89
66621--67850	344	3.6	344	96	1	2227	37	12	19	29	1.89
68167--68207	3	13.7	3	100	0	82	34	0	0	65	0.93
68203--68232	11	2.8	11	95	5	53	56	0	0	43	0.99
68667--68705	18	2.2	18	90	9	62	64	7	28	0	1.21
68978--69003	10	2.6	10	100	0	52	0	26	61	11	1.30
74664--74704	21	1.9	22	90	5	66	36	2	0	60	1.10
74792--74836	19	2.4	19	81	7	56	37	0	2	60	1.09
74785--74866	30	2.9	27	72	25	78	45	0	1	53	1.08
83866--83959	20	4.7	20	89	5	154	29	21	20	28	1.98
84633--84716	23	3.7	23	90	0	114	20	20	25	34	1.96
88178--88249	20	3.6	20	92	0	126	31	13	18	36	1.90
88912--88958	23	2.0	24	91	4	78	19	23	25	31	1.98
93235--93273	3	13.0	3	88	0	60	28	0	5	66	1.12
111427--111499	37	2.0	36	87	10	105	19	8	20	52	1.71
111550--111621	2	36.0	2	100	0	144	50	0	0	50	1.00
112584--112636	23	2.3	23	80	3	61	15	16	16	50	1.78
115380--115431	2	26.0	2	100	0	104	50	0	0	50	1.00
115713--116030	158	2.0	158	84	3	417	48	5	19	26	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115901--116155	128	2.0	129	89	3	399	50	4	17	27	1.64

Tables:   1

The End!