genome.fa.s6498.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006498.1 Hibiscus syriacus cultivar Beakdansim tig00015810_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88166

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1358--1398	14	2.7	15	85	10	57	43	9	19	26	1.82
13034--13063	2	15.0	2	92	0	51	0	53	0	46	1.00
21641--21696	29	1.9	29	85	0	76	62	8	0	28	1.25
21683--21713	16	1.9	16	93	0	53	51	6	0	41	1.27
30365--30641	107	2.6	107	94	1	475	35	22	9	32	1.86
30819--31314	107	4.7	106	77	9	451	34	18	13	33	1.89
31053--31247	99	2.0	98	84	3	257	35	20	13	31	1.91
34185--34238	24	2.2	24	93	0	90	35	12	7	44	1.71
35025--35472	230	2.0	225	93	2	770	45	7	7	39	1.62
35536--35581	20	2.3	20	96	0	83	56	8	17	17	1.65
35702--35747	19	2.4	18	82	10	65	52	10	17	19	1.74
38070--38129	32	1.9	32	89	3	95	30	0	46	23	1.52
39918--39966	19	2.6	19	93	0	80	30	0	10	59	1.31
39918--39978	19	3.3	19	86	2	70	32	0	11	55	1.36
40089--41647	199	7.9	199	97	1	2898	37	15	15	31	1.89
43107--43174	21	3.4	18	69	21	55	36	8	35	19	1.83
43107--43204	6	16.3	6	80	0	70	36	7	34	21	1.81
43122--43208	3	29.0	3	77	0	84	35	5	34	24	1.79
43110--43200	42	2.2	42	91	0	146	35	7	35	21	1.83
43107--43204	18	5.4	18	78	0	88	36	7	34	21	1.81
44677--45198	182	2.9	180	93	2	868	36	14	16	33	1.88
47657--47721	25	2.6	25	80	0	85	35	9	13	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48009--48072	23	2.8	23	87	0	92	35	6	20	37	1.78
48009--48081	23	3.2	23	82	7	85	34	5	20	39	1.76
48347--48397	25	2.0	25	92	0	84	33	7	19	39	1.81
48692--48728	18	2.1	18	89	0	56	32	5	10	51	1.60
48683--48733	24	2.1	23	82	13	66	33	3	13	49	1.61
49407--49470	23	2.8	23	87	0	92	35	6	20	37	1.78
49407--49479	23	3.2	23	82	7	85	34	5	20	39	1.76
54215--54292	39	2.0	39	94	0	138	35	5	14	44	1.67
54421--54453	13	2.3	15	90	10	52	54	0	18	27	1.44
56669--56733	2	32.5	2	100	0	130	49	0	0	50	1.00
58868--58893	2	13.0	2	100	0	52	50	0	0	50	1.00
60322--60352	2	15.5	2	100	0	62	51	0	0	48	1.00
63004--63127	59	2.1	59	83	1	149	41	7	9	41	1.65
63307--63351	23	2.0	23	100	0	90	20	40	13	26	1.89
63785--63814	14	2.1	14	93	0	51	10	13	16	60	1.59
73527--73746	102	2.2	102	82	3	255	30	12	24	32	1.92
74842--74972	60	2.2	60	80	2	138	28	13	18	39	1.89
74452--74994	231	2.4	222	78	8	547	27	15	17	39	1.90
80049--80188	63	2.2	63	84	0	172	16	32	22	28	1.96
81041--81085	2	22.5	2	100	0	90	51	0	0	48	1.00
84581--84610	14	2.1	15	93	6	53	36	0	0	63	0.95

Tables:   1

The End!