genome.fa.s6499.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006499.1 Hibiscus syriacus cultivar Beakdansim tig00015812_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107163

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5378--5744	156	2.3	157	81	5	447	30	14	5	49	1.66
10767--10825	21	2.8	21	81	18	70	30	0	0	69	0.89
10767--10823	20	2.8	21	84	10	73	29	0	0	70	0.88
11900--11924	2	12.5	2	100	0	50	48	0	0	52	1.00
14223--14248	2	13.0	2	100	0	52	50	0	0	50	1.00
18312--18390	30	2.6	30	76	7	88	26	21	13	37	1.91
19684--19730	24	2.0	24	95	0	85	55	27	0	17	1.42
26323--26347	2	12.5	2	100	0	50	52	0	0	48	1.00
27549--27585	17	2.2	17	95	4	67	24	5	0	70	1.08
31921--32212	49	5.8	49	80	10	279	32	19	12	35	1.89
35220--35343	62	2.0	62	92	3	205	33	19	3	43	1.67
37046--37089	2	22.0	2	100	0	88	50	0	0	50	1.00
40237--40281	23	2.0	23	81	0	54	35	20	20	24	1.96
41402--41524	60	2.0	60	85	0	165	35	6	26	30	1.82
41421--41505	29	2.8	31	69	3	75	40	7	23	29	1.81
42408--42433	12	2.2	12	100	0	52	30	19	19	30	1.96
46537--46687	60	2.6	59	83	8	184	34	17	13	34	1.89
47409--47539	31	4.2	32	83	5	153	54	11	8	25	1.64
47423--47539	62	1.9	62	90	0	189	54	10	8	26	1.62
48217--48282	31	2.2	31	88	2	107	42	10	22	24	1.85
50637--50705	30	2.3	29	80	4	84	39	5	8	46	1.59
55547--55609	32	1.9	33	90	3	101	44	14	19	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60571--60611	20	2.0	20	100	0	82	34	24	9	31	1.88
62175--62246	11	6.7	11	72	10	60	47	4	4	44	1.41
62172--62311	32	4.4	31	77	7	122	44	7	6	41	1.59
62172--62323	64	2.4	63	80	6	173	43	8	5	42	1.59
63165--63190	3	8.7	3	100	0	52	65	0	0	34	0.93
64740--64813	23	3.4	22	67	16	64	48	2	1	47	1.24
64728--64824	42	2.5	37	78	18	115	51	2	1	45	1.19
64781--64829	19	2.7	17	79	14	53	53	0	0	46	1.00
64804--64855	8	6.5	8	76	8	52	59	1	0	38	1.08
64959--65015	25	2.3	25	87	6	80	50	0	0	49	1.00
65352--65402	19	2.8	18	83	13	61	54	1	0	43	1.11
65364--65423	30	2.0	29	87	3	84	58	3	0	38	1.15
67763--67846	31	2.7	32	90	1	125	51	9	17	21	1.74
67769--67859	31	2.9	31	86	4	121	51	9	17	20	1.74
76063--77132	533	2.0	533	99	0	2131	25	13	16	44	1.84
78340--78938	297	2.0	297	97	0	1135	30	17	18	33	1.94
79390--79734	172	2.0	172	99	0	681	29	19	15	35	1.93
80437--80911	235	2.0	234	97	1	916	28	13	18	39	1.89
88887--89615	303	2.4	297	88	7	1031	26	14	17	41	1.88
92173--92217	11	4.1	11	82	5	56	71	4	11	13	1.29
92173--92214	22	1.9	22	90	9	68	69	4	11	14	1.34
96885--96945	30	2.0	30	90	6	97	47	11	16	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99203--99241	20	2.0	20	89	0	60	33	35	5	25	1.78
102253--102335	2	43.5	2	90	9	138	50	0	0	49	1.00
103431--103496	27	2.4	27	79	2	78	18	15	18	48	1.81
105889--105935	20	2.3	20	96	0	85	31	10	31	25	1.90

Tables:   1

The End!