genome.fa.s65.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000065.1 Hibiscus syriacus cultivar Beakdansim tig00000110_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85859

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2330--2488	55	2.9	55	84	0	210	22	20	10	45	1.82
6042--6091	21	2.3	22	80	13	59	18	12	50	20	1.78
6277--6367	9	10.6	9	71	14	50	51	1	2	45	1.20
6301--6374	14	5.3	13	72	23	62	54	1	2	41	1.23
6305--6372	3	24.0	3	71	11	54	57	1	2	38	1.23
6304--6379	37	2.1	36	87	2	107	53	1	2	42	1.23
6952--6977	2	13.0	2	100	0	52	50	0	0	50	1.00
9309--9342	14	2.4	14	95	0	59	38	20	20	20	1.94
16990--17146	33	4.8	33	75	6	104	34	29	13	22	1.92
17028--17141	33	3.5	33	79	5	115	34	27	14	24	1.94
20223--20289	19	3.5	19	93	0	98	28	16	28	26	1.97
20388--20428	21	2.0	21	90	0	64	34	24	19	21	1.97
27513--27564	3	16.3	3	84	15	61	32	0	0	67	0.91
27513--27564	16	3.4	16	78	21	67	32	0	0	67	0.91
27512--27562	10	5.2	10	86	13	79	31	0	0	68	0.90
27512--27576	19	3.4	18	85	10	76	32	0	1	66	1.01
27514--27572	13	4.6	13	82	15	61	32	0	1	66	1.02
27679--27751	25	2.9	25	100	0	146	38	20	16	24	1.93
28131--28161	10	3.1	10	100	0	62	90	0	9	0	0.46
29560--29603	22	2.0	22	81	0	52	27	4	15	52	1.63
31111--31171	30	2.0	32	93	6	108	16	14	9	59	1.61
34022--34056	17	2.1	16	89	5	52	68	5	25	0	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35254--35303	4	13.2	4	83	12	70	52	22	0	26	1.48
35645--35782	36	3.9	35	80	7	161	31	19	12	36	1.89
35756--35994	105	2.3	102	83	7	288	30	20	11	37	1.88
35962--36059	36	2.8	34	80	6	108	34	19	12	33	1.89
36307--36425	27	4.3	27	82	11	152	30	10	15	43	1.80
36310--36437	56	2.3	57	82	6	163	32	10	14	42	1.81
36396--36452	29	1.9	29	85	3	78	36	7	12	43	1.69
36446--36602	52	3.0	52	96	0	278	31	14	17	37	1.89
36590--36652	29	2.1	30	91	2	101	36	7	14	41	1.75
37098--37182	31	2.7	30	80	10	91	28	17	15	38	1.90
37824--37877	28	1.9	28	92	0	90	22	14	16	46	1.84
37896--38220	40	7.7	40	69	14	179	25	31	19	23	1.98
37896--38186	40	6.8	44	73	11	192	26	30	19	24	1.98
37890--38186	46	6.9	45	70	17	191	26	29	19	24	1.99
37889--38216	129	2.5	129	94	0	566	26	30	19	23	1.98
38413--38462	3	16.0	3	88	12	66	34	0	0	66	0.92
38578--38649	25	2.9	25	100	0	144	38	19	16	25	1.92
40448--40491	22	2.0	22	81	0	52	27	4	15	52	1.63
41635--41695	31	2.0	31	81	12	72	42	11	13	32	1.79
41916--41967	2	26.0	2	100	0	104	50	0	0	50	1.00
42074--42127	25	2.1	26	83	10	67	64	5	1	27	1.26
42440--42481	3	13.3	3	85	9	57	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44792--44910	35	3.5	35	80	10	138	24	26	14	34	1.94
45233--45572	131	2.6	131	84	2	423	27	30	18	23	1.98
52902--53015	54	2.1	52	83	4	138	21	14	7	56	1.63
52826--53070	30	8.4	29	68	15	114	22	12	8	56	1.63
52984--53049	32	2.1	33	85	5	91	18	12	7	62	1.52
61594--61681	24	3.7	24	72	6	70	44	15	15	23	1.86
62828--62863	18	2.0	18	88	0	54	22	22	5	50	1.70
64158--64197	17	2.4	17	100	0	80	25	32	25	17	1.97
64168--64218	15	3.3	15	86	5	57	23	25	31	19	1.98
64213--64249	18	2.1	18	100	0	74	10	24	48	16	1.77
64207--64236	13	2.3	13	100	0	60	13	23	46	16	1.82
67984--68014	16	1.9	16	100	0	62	29	19	12	38	1.89
67985--68026	16	2.7	16	88	3	59	28	21	11	38	1.89
72458--72496	17	2.3	17	95	0	69	46	7	7	38	1.61
75546--75604	28	2.1	28	87	0	82	42	15	8	33	1.77
75938--76002	22	3.0	21	80	6	67	40	12	1	46	1.51
78739--78908	41	4.1	41	80	4	146	37	16	15	30	1.90

Tables:   1

The End!