genome.fa.s650.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000650.1 Hibiscus syriacus cultivar Beakdansim tig00001256_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90906

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2688--2748	7	8.7	7	100	0	122	59	13	27	0	1.35
2760--2808	9	5.9	8	81	13	55	79	0	18	2	0.83
2610--2798	7	26.1	7	78	14	82	67	5	24	2	1.22
3782--3833	2	26.0	2	100	0	104	50	0	0	50	1.00
4078--4119	18	2.3	18	83	0	57	21	16	33	28	1.95
5811--5953	69	2.1	69	95	0	259	37	8	19	34	1.82
9649--9697	18	2.7	18	90	0	71	20	20	30	28	1.98
11008--11780	258	3.0	258	85	1	1037	33	15	17	32	1.92
11547--11626	41	1.9	42	82	2	99	23	22	20	33	1.97
12199--12719	42	12.8	42	78	9	469	24	19	17	38	1.93
12199--12719	80	6.4	80	79	10	452	24	19	17	38	1.93
12475--12725	87	3.0	85	84	7	316	24	17	16	41	1.89
12470--12810	167	2.0	174	82	5	417	23	17	17	41	1.89
12721--12849	44	2.9	44	82	9	163	21	16	19	42	1.89
12831--12866	17	2.1	17	100	0	72	41	16	25	16	1.89
13515--13833	134	2.4	134	85	5	430	30	19	20	29	1.97
21801--21825	2	12.5	2	100	0	50	48	0	0	52	1.00
24537--24602	32	2.1	32	97	0	123	36	12	10	40	1.77
30582--30614	17	1.9	17	93	0	57	33	6	6	54	1.50
31940--31998	31	1.9	31	89	0	91	44	15	5	35	1.68
36727--36783	24	2.4	24	96	0	105	17	24	26	31	1.97
36755--36793	17	2.3	17	86	0	51	15	23	30	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41676--41709	18	1.9	17	88	5	50	64	0	2	32	1.08
45222--45394	90	1.9	91	87	5	253	28	24	18	28	1.98
45272--45395	45	2.8	44	72	10	126	27	23	17	31	1.97
47232--47263	16	2.0	16	100	0	64	31	6	31	31	1.82
50421--50455	13	2.7	13	90	0	52	57	5	31	5	1.46
51393--51479	44	2.0	44	95	0	156	36	18	26	18	1.94
53347--53396	22	2.3	22	100	0	100	14	4	26	56	1.56
56280--56362	29	2.8	29	90	1	130	43	9	13	33	1.76
61018--61100	29	2.8	29	90	1	130	43	9	13	33	1.76
65036--65115	29	2.8	29	94	0	133	30	11	13	45	1.79
65642--65683	18	2.3	19	87	4	59	42	4	4	47	1.45
66320--66809	181	2.7	181	87	1	687	41	13	17	27	1.86
68775--68830	24	2.4	23	80	8	69	44	0	3	51	1.18
69218--69261	21	2.1	21	95	0	79	40	11	34	13	1.81
69283--69412	66	2.0	67	83	4	165	33	2	42	22	1.66
69513--69568	18	3.1	18	94	0	94	57	0	39	3	1.16
71065--71113	19	2.6	19	96	0	89	32	2	10	55	1.45
71462--72577	200	5.6	198	83	4	1264	37	14	16	32	1.89
71462--72620	401	2.9	395	83	5	1357	37	14	16	32	1.88
73263--73308	2	23.0	2	100	0	92	50	0	0	50	1.00
74128--74168	3	13.7	3	84	0	55	36	2	29	31	1.71
75437--75475	15	2.6	15	87	0	51	38	17	7	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75629--77187	201	7.9	188	80	11	1060	37	13	16	32	1.87
75476--77232	400	4.4	399	88	3	2270	37	13	16	32	1.87
75801--77232	201	7.1	201	87	2	2087	37	13	16	32	1.87
75476--77232	601	2.9	601	90	2	2653	37	13	16	32	1.87
81047--81960	196	4.6	197	81	7	1022	39	14	14	31	1.86
81955--82200	84	2.9	87	93	4	428	32	15	11	40	1.84
82038--82082	23	2.0	23	95	0	81	37	20	8	33	1.83
82122--82166	23	2.0	23	86	0	63	40	17	11	31	1.85
82874--82919	15	3.0	15	76	23	51	32	4	4	58	1.37
89256--89323	35	1.9	35	82	5	84	44	1	4	50	1.31
90382--90453	29	2.4	30	84	9	94	43	6	0	50	1.29
90659--90685	2	13.5	2	100	0	54	51	48	0	0	1.00
90685--90754	2	36.0	2	91	5	117	48	0	1	50	1.09

Tables:   1

The End!