Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01006501.1 Hibiscus syriacus cultivar Beakdansim tig00015822_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 209197
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33


Found at i:6932 original size:23 final size:23

Alignment explanation

Indices: 6903--6950 Score: 96 Period size: 23 Copynumber: 2.1 Consensus size: 23 6893 ATTGTGATAG 6903 TGTGATAGTTCACATCTAAATGA 1 TGTGATAGTTCACATCTAAATGA 6926 TGTGATAGTTCACATCTAAATGA 1 TGTGATAGTTCACATCTAAATGA 6949 TG 1 TG 6951 AAGTCACGAA Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 23 25 1.00 ACGTcount: A:0.33, C:0.12, G:0.19, T:0.35 Consensus pattern (23 bp): TGTGATAGTTCACATCTAAATGA Found at i:12107 original size:16 final size:17 Alignment explanation

Indices: 12075--12108 Score: 52 Period size: 17 Copynumber: 2.1 Consensus size: 17 12065 TTTTTTTGAA 12075 ATTTATAAATCTTTTTT 1 ATTTATAAATCTTTTTT * 12092 ATTTTTAAAT-TTTTTT 1 ATTTATAAATCTTTTTT 12108 A 1 A 12109 AAAAATATTA Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 16 7 0.44 17 9 0.56 ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68 Consensus pattern (17 bp): ATTTATAAATCTTTTTT Found at i:14391 original size:22 final size:22 Alignment explanation

Indices: 14361--14408 Score: 87 Period size: 22 Copynumber: 2.2 Consensus size: 22 14351 TATGGGTAAG * 14361 GGTTTATCATGAGTGGTGATTT 1 GGTTGATCATGAGTGGTGATTT 14383 GGTTGATCATGAGTGGTGATTT 1 GGTTGATCATGAGTGGTGATTT 14405 GGTT 1 GGTT 14409 TCTCGAAGGT Statistics Matches: 25, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 22 25 1.00 ACGTcount: A:0.17, C:0.04, G:0.35, T:0.44 Consensus pattern (22 bp): GGTTGATCATGAGTGGTGATTT Found at i:15079 original size:32 final size:32 Alignment explanation

Indices: 15019--15116 Score: 108 Period size: 32 Copynumber: 3.1 Consensus size: 32 15009 ATAGTTATTA * * * * 15019 AATT-TATCGAATTGTTTTAAAATGATCATTG 1 AATTCTATCAAATTATTATAAAATAATCATTG * * 15050 GATTCTATCAAATTATTATAAAATAATCATTA 1 AATTCTATCAAATTATTATAAAATAATCATTG * * * 15082 AATTCTATCAAATTGTTACAAAATAATAATTG 1 AATTCTATCAAATTATTATAAAATAATCATTG 15114 AAT 1 AAT 15117 ATATTAAACT Statistics Matches: 55, Mismatches: 11, Indels: 1 0.82 0.16 0.01 Matches are distributed among these distances: 31 3 0.05 32 52 0.95 ACGTcount: A:0.44, C:0.08, G:0.07, T:0.41 Consensus pattern (32 bp): AATTCTATCAAATTATTATAAAATAATCATTG Found at i:16514 original size:2 final size:2 Alignment explanation

Indices: 16507--16568 Score: 124 Period size: 2 Copynumber: 31.0 Consensus size: 2 16497 ACATTTTTAA 16507 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 16549 AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT 16569 GTTTTCACCG Statistics Matches: 60, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 60 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:17589 original size:29 final size:29 Alignment explanation

Indices: 17557--17617 Score: 122 Period size: 29 Copynumber: 2.1 Consensus size: 29 17547 TGTCTCTAAA 17557 CTTTAATTTGCCATAATTTGTTCTCCAAT 1 CTTTAATTTGCCATAATTTGTTCTCCAAT 17586 CTTTAATTTGCCATAATTTGTTCTCCAAT 1 CTTTAATTTGCCATAATTTGTTCTCCAAT 17615 CTT 1 CTT 17618 ATACTGTGAT Statistics Matches: 32, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 29 32 1.00 ACGTcount: A:0.23, C:0.21, G:0.07, T:0.49 Consensus pattern (29 bp): CTTTAATTTGCCATAATTTGTTCTCCAAT Found at i:21792 original size:54 final size:54 Alignment explanation

Indices: 21718--21831 Score: 183 Period size: 54 Copynumber: 2.1 Consensus size: 54 21708 TTAGTGCATT * * 21718 TTTTAATCATATACACCCCATAGTGCTATATAATTAGTTTGGCACCTTTTATGCC 1 TTTT-ATCATATACACCCCATAGTGCTATATAATCAATTTGGCACCTTTTATGCC * * 21773 TTTTATCATATGCATCCCATAGTGCTATATAATCAATTTGGCACCTTTTATGCC 1 TTTTATCATATACACCCCATAGTGCTATATAATCAATTTGGCACCTTTTATGCC 21827 TTTTA 1 TTTTA 21832 ACATTTGTAC Statistics Matches: 55, Mismatches: 4, Indels: 1 0.92 0.07 0.02 Matches are distributed among these distances: 54 51 0.93 55 4 0.07 ACGTcount: A:0.26, C:0.21, G:0.11, T:0.42 Consensus pattern (54 bp): TTTTATCATATACACCCCATAGTGCTATATAATCAATTTGGCACCTTTTATGCC Found at i:23440 original size:16 final size:16 Alignment explanation

Indices: 23419--23450 Score: 64 Period size: 16 Copynumber: 2.0 Consensus size: 16 23409 CTAATCATTC 23419 TTGTAGAATTTATAGT 1 TTGTAGAATTTATAGT 23435 TTGTAGAATTTATAGT 1 TTGTAGAATTTATAGT 23451 GATTTTATAA Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 16 1.00 ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50 Consensus pattern (16 bp): TTGTAGAATTTATAGT Found at i:24304 original size:2 final size:2 Alignment explanation

Indices: 24287--24349 Score: 110 Period size: 2 Copynumber: 32.0 Consensus size: 2 24277 AATATAAAAC * 24287 TA TA -A TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 24328 TA TA TA TA TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA 24350 ATGTTTTCAC Statistics Matches: 58, Mismatches: 2, Indels: 2 0.94 0.03 0.03 Matches are distributed among these distances: 1 1 0.02 2 57 0.98 ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48 Consensus pattern (2 bp): TA Found at i:29535 original size:16 final size:16 Alignment explanation

Indices: 29514--29544 Score: 62 Period size: 16 Copynumber: 1.9 Consensus size: 16 29504 ATAATCAGTT 29514 TGGCACCTTTTATGCA 1 TGGCACCTTTTATGCA 29530 TGGCACCTTTTATGC 1 TGGCACCTTTTATGC 29545 CTTTTATCAT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 15 1.00 ACGTcount: A:0.16, C:0.26, G:0.19, T:0.39 Consensus pattern (16 bp): TGGCACCTTTTATGCA Found at i:31310 original size:16 final size:16 Alignment explanation

Indices: 31289--31320 Score: 64 Period size: 16 Copynumber: 2.0 Consensus size: 16 31279 CTAATCATTC 31289 TTGTAGAATTTATAGT 1 TTGTAGAATTTATAGT 31305 TTGTAGAATTTATAGT 1 TTGTAGAATTTATAGT 31321 GATTTTATAA Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 16 1.00 ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50 Consensus pattern (16 bp): TTGTAGAATTTATAGT Found at i:31970 original size:2 final size:2 Alignment explanation

Indices: 31963--31989 Score: 54 Period size: 2 Copynumber: 13.5 Consensus size: 2 31953 CTAACCCTAC 31963 AT AT AT AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT AT A 31990 ATGTTTTCAC Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 25 1.00 ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48 Consensus pattern (2 bp): AT Found at i:43722 original size:16 final size:16 Alignment explanation

Indices: 43701--43731 Score: 62 Period size: 16 Copynumber: 1.9 Consensus size: 16 43691 ATAATCAGTT 43701 TGGCACCTTTTATGCA 1 TGGCACCTTTTATGCA 43717 TGGCACCTTTTATGC 1 TGGCACCTTTTATGC 43732 CTTTTATCAT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 15 1.00 ACGTcount: A:0.16, C:0.26, G:0.19, T:0.39 Consensus pattern (16 bp): TGGCACCTTTTATGCA Found at i:45523 original size:16 final size:16 Alignment explanation

Indices: 45502--45533 Score: 64 Period size: 16 Copynumber: 2.0 Consensus size: 16 45492 CTAATCATTC 45502 TTGTAGAATTTATAGT 1 TTGTAGAATTTATAGT 45518 TTGTAGAATTTATAGT 1 TTGTAGAATTTATAGT 45534 GATTTTATAA Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 16 1.00 ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50 Consensus pattern (16 bp): TTGTAGAATTTATAGT Found at i:46187 original size:2 final size:2 Alignment explanation

Indices: 46180--46209 Score: 60 Period size: 2 Copynumber: 15.0 Consensus size: 2 46170 CCCTACATAC 46180 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 46210 TTAATGTTTT Statistics Matches: 28, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 28 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:57686 original size:16 final size:16 Alignment explanation

Indices: 57665--57695 Score: 62 Period size: 16 Copynumber: 1.9 Consensus size: 16 57655 ATAATCAGTT 57665 TGGCACCTTTTATGCA 1 TGGCACCTTTTATGCA 57681 TGGCACCTTTTATGC 1 TGGCACCTTTTATGC 57696 CTTTTATCAT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 15 1.00 ACGTcount: A:0.16, C:0.26, G:0.19, T:0.39 Consensus pattern (16 bp): TGGCACCTTTTATGCA Found at i:59487 original size:16 final size:16 Alignment explanation

Indices: 59466--59497 Score: 64 Period size: 16 Copynumber: 2.0 Consensus size: 16 59456 CTAATCATTC 59466 TTGTAGAATTTATAGT 1 TTGTAGAATTTATAGT 59482 TTGTAGAATTTATAGT 1 TTGTAGAATTTATAGT 59498 GATTTTATAA Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 16 1.00 ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50 Consensus pattern (16 bp): TTGTAGAATTTATAGT Found at i:66724 original size:18 final size:18 Alignment explanation

Indices: 66701--66746 Score: 65 Period size: 18 Copynumber: 2.6 Consensus size: 18 66691 ACCGGTTTCA * * 66701 ACCCGACCCGACCCGTTT 1 ACCCGACCCGACCCATTG * 66719 ACCCGACCCCACCCATTG 1 ACCCGACCCGACCCATTG 66737 ACCCGACCCG 1 ACCCGACCCG 66747 TTAACCGTTA Statistics Matches: 24, Mismatches: 4, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 18 24 1.00 ACGTcount: A:0.20, C:0.54, G:0.15, T:0.11 Consensus pattern (18 bp): ACCCGACCCGACCCATTG Found at i:69662 original size:63 final size:63 Alignment explanation

Indices: 69594--69717 Score: 155 Period size: 63 Copynumber: 2.0 Consensus size: 63 69584 CTAATGTGAC * * * 69594 TCTTAGGTAGG-CTCTGCGGCCCTGAGATC-ATTCTCGGGTAGGCACT-ATGGCCCTAAGATGTG 1 TCTTAGGTAGGCCTC-ACGGCCCCGAAATCTA-TCTCGGGTAGGCACTCA-GGCCCTAAGATGTG 69656 T 63 T * * 69657 TCTTAGGTAGGCCTCACGGCCCCGAAATCTATCTTGGGTAGGCTCTCAGGCCCTAAGATGT 1 TCTTAGGTAGGCCTCACGGCCCCGAAATCTATCTCGGGTAGGCACTCAGGCCCTAAGATGT 69718 TCCCTTAGGT Statistics Matches: 53, Mismatches: 5, Indels: 6 0.83 0.08 0.09 Matches are distributed among these distances: 63 48 0.91 64 5 0.09 ACGTcount: A:0.19, C:0.26, G:0.28, T:0.27 Consensus pattern (63 bp): TCTTAGGTAGGCCTCACGGCCCCGAAATCTATCTCGGGTAGGCACTCAGGCCCTAAGATGTGT Found at i:69678 original size:32 final size:31 Alignment explanation

Indices: 69594--69717 Score: 78 Period size: 31 Copynumber: 4.0 Consensus size: 31 69584 CTAATGTGAC * * 69594 TCTTAGGTAGGCTCTGC-GGCCCTGAGAT-CA 1 TCTTAGGTAGGCTCT-CAGGCCCTAAGATGTA ** * * 69624 TTCTCGGGTAGGCACT-ATGGCCCTAAGATGTGT 1 -TCTTAGGTAGGCTCTCA-GGCCCTAAGATGT-A * * 69657 TCTTAGGTAGGC-CTCACGGCCCCGAA-ATCTA 1 TCTTAGGTAGGCTCTCA-GG-CCCTAAGATGTA * 69688 TCTTGGGTAGGCTCTCAGGCCCTAAGATGT 1 TCTTAGGTAGGCTCTCAGGCCCTAAGATGT 69718 TCCCTTAGGT Statistics Matches: 70, Mismatches: 15, Indels: 16 0.69 0.15 0.16 Matches are distributed among these distances: 30 5 0.07 31 40 0.57 32 20 0.29 33 5 0.07 ACGTcount: A:0.19, C:0.26, G:0.28, T:0.27 Consensus pattern (31 bp): TCTTAGGTAGGCTCTCAGGCCCTAAGATGTA Found at i:74234 original size:16 final size:16 Alignment explanation

Indices: 74209--74240 Score: 55 Period size: 16 Copynumber: 2.0 Consensus size: 16 74199 CTAATCGTTC 74209 TTGTACAATTTATAGT 1 TTGTACAATTTATAGT * 74225 TTGTAGAATTTATAGT 1 TTGTACAATTTATAGT 74241 GATTTTATAA Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 16 15 1.00 ACGTcount: A:0.31, C:0.03, G:0.16, T:0.50 Consensus pattern (16 bp): TTGTACAATTTATAGT Found at i:77507 original size:22 final size:22 Alignment explanation

Indices: 77482--77523 Score: 75 Period size: 22 Copynumber: 1.9 Consensus size: 22 77472 GAAAGTCAAC 77482 GGTCAACGGTCCGGTCGGGTCG 1 GGTCAACGGTCCGGTCGGGTCG * 77504 GGTCAACGGTCGGGTCGGGT 1 GGTCAACGGTCCGGTCGGGT 77524 TAGACCGGTC Statistics Matches: 19, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 22 19 1.00 ACGTcount: A:0.10, C:0.24, G:0.48, T:0.19 Consensus pattern (22 bp): GGTCAACGGTCCGGTCGGGTCG Found at i:77541 original size:9 final size:9 Alignment explanation

Indices: 77527--77579 Score: 52 Period size: 9 Copynumber: 5.7 Consensus size: 9 77517 GTCGGGTTAG 77527 ACCGGTCAA 1 ACCGGTCAA * 77536 ACCGGTTCAG 1 ACCGG-TCAA 77546 ACCGGTCAA 1 ACCGGTCAA * * 77555 ACCGATTCGA 1 ACCG-GTCAA * 77565 ACCGGTTAA 1 ACCGGTCAA 77574 ACCGGT 1 ACCGGT 77580 TTCCAGCAGC Statistics Matches: 35, Mismatches: 7, Indels: 4 0.76 0.15 0.09 Matches are distributed among these distances: 9 20 0.57 10 15 0.43 ACGTcount: A:0.28, C:0.30, G:0.25, T:0.17 Consensus pattern (9 bp): ACCGGTCAA Found at i:77547 original size:19 final size:19 Alignment explanation

Indices: 77521--77580 Score: 79 Period size: 19 Copynumber: 3.2 Consensus size: 19 77511 GGTCGGGTCG 77521 GGTT-AGACCGGTCAAACC 1 GGTTCAGACCGGTCAAACC 77539 GGTTCAGACCGGTCAAACC 1 GGTTCAGACCGGTCAAACC * * 77558 GATTC-GAACCGGTTAAACC 1 GGTTCAG-ACCGGTCAAACC 77577 GGTT 1 GGTT 77581 TCCAGCAGCC Statistics Matches: 37, Mismatches: 3, Indels: 3 0.86 0.07 0.07 Matches are distributed among these distances: 18 5 0.14 19 32 0.86 ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20 Consensus pattern (19 bp): GGTTCAGACCGGTCAAACC Found at i:84706 original size:83 final size:83 Alignment explanation

Indices: 84612--84806 Score: 264 Period size: 83 Copynumber: 2.3 Consensus size: 83 84602 CAAAATGGTA * 84612 ACTTTAGCGGCGTTTTTATACAAACGCCGCAATAAGATTAATCTATAGTGGCATTTTTTAAACAA 1 ACTTTAGCGGCGTTTTTATACAAACGCCGCAATAAGATTAATATATAGTGGCATTTTTTAAACAA * 84677 ACGTTGCAACAAAGTAGT 66 ACGTCGCAACAAAGTAGT * * * * * * * * 84695 ACTTTAGCGGCGCTGTTAGACAAACGCCGCAATAGGTTTCATATATAGTGTCATTTTTTCAACAA 1 ACTTTAGCGGCGTTTTTATACAAACGCCGCAATAAGATTAATATATAGTGGCATTTTTTAAACAA * * 84760 ACGTCGCACCATAGTAGT 66 ACGTCGCAACAAAGTAGT * * 84778 AATTTAGCGGTGTTTTTATACAAACGCCG 1 ACTTTAGCGGCGTTTTTATACAAACGCCG 84807 TAATGAGTAA Statistics Matches: 95, Mismatches: 17, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 83 95 1.00 ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31 Consensus pattern (83 bp): ACTTTAGCGGCGTTTTTATACAAACGCCGCAATAAGATTAATATATAGTGGCATTTTTTAAACAA ACGTCGCAACAAAGTAGT Found at i:85062 original size:41 final size:41 Alignment explanation

Indices: 84972--85064 Score: 98 Period size: 41 Copynumber: 2.3 Consensus size: 41 84962 AAATACTAAG * * * * * 84972 ACTTTCGTGTCGTTTGTTTACAAACGCCGCTATAAACTCGT 1 ACTTTAGTGGCGTTTGTTTAAAAACACCGCTATAAACTCAT * * * 85013 ACTATAGTGGCGTTTGTTTAAAAACATCGCTATAGAA-TTAT 1 ACTTTAGTGGCGTTTGTTTAAAAACACCGCTATA-AACTCAT 85054 ACTTTAGTGGC 1 ACTTTAGTGGC 85065 TTTTTTTCCA Statistics Matches: 42, Mismatches: 9, Indels: 2 0.79 0.17 0.04 Matches are distributed among these distances: 41 40 0.95 42 2 0.05 ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37 Consensus pattern (41 bp): ACTTTAGTGGCGTTTGTTTAAAAACACCGCTATAAACTCAT Found at i:85604 original size:40 final size:41 Alignment explanation

Indices: 85560--85636 Score: 93 Period size: 40 Copynumber: 1.9 Consensus size: 41 85550 TTTGTATAAA * 85560 AACACCGCTAGAGAGTTGT-TTGTAGTGGCATTTTTACACG 1 AACACCGCTAGAGACTTGTATTGTAGTGGCATTTTTACACG * * * * * 85600 AACACTGCTATAGACTTGTATTTTAGTGTCGTTTTTA 1 AACACCGCTAGAGACTTGTATTGTAGTGGCATTTTTA 85637 TTCAAACGCC Statistics Matches: 30, Mismatches: 6, Indels: 1 0.81 0.16 0.03 Matches are distributed among these distances: 40 16 0.53 41 14 0.47 ACGTcount: A:0.25, C:0.16, G:0.21, T:0.39 Consensus pattern (41 bp): AACACCGCTAGAGACTTGTATTGTAGTGGCATTTTTACACG Found at i:90000 original size:44 final size:43 Alignment explanation

Indices: 89897--90012 Score: 151 Period size: 43 Copynumber: 2.7 Consensus size: 43 89887 TAAAAGTGGC * * ** * 89897 TATCACTTGTCATTTAATTATTTTTGGATCGGCTTAGAAGGGA 1 TATCACTTGTCATTTAGTTATATTTGGATCGGCCAAGAAGAGA * * 89940 TATCACTTGTCGTTTAGTTATATTTGGATCGGCCAAGATGCAGA 1 TATCACTTGTCATTTAGTTATATTTGGATCGGCCAAGAAG-AGA * 89984 TATCACTTATCATTTAGTTATATTTGGAT 1 TATCACTTGTCATTTAGTTATATTTGGAT 90013 TGCCTTAGAT Statistics Matches: 63, Mismatches: 9, Indels: 1 0.86 0.12 0.01 Matches are distributed among these distances: 43 34 0.54 44 29 0.46 ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42 Consensus pattern (43 bp): TATCACTTGTCATTTAGTTATATTTGGATCGGCCAAGAAGAGA Found at i:90076 original size:44 final size:44 Alignment explanation

Indices: 89897--90078 Score: 181 Period size: 44 Copynumber: 4.2 Consensus size: 44 89887 TAAAAGTGGC * * * 89897 TATCACTTGTCATTTAATTATTTTTGGATCGGCTTAGAAGGG-A 1 TATCACTTGTCATTTAGTTATATTTGGATCGGCTTAGATGGGAA * ** * 89940 TATCACTTGTCGTTTAGTTATATTTGGATCGGCCAAGAT-GCAGA 1 TATCACTTGTCATTTAGTTATATTTGGATCGGCTTAGATGGGA-A * * * ** 89984 TATCACTTATCATTTAGTTATATTTGGATTGCCTTAGATGGGGT 1 TATCACTTGTCATTTAGTTATATTTGGATCGGCTTAGATGGGAA * * * 90028 TTTCACTTGTCGTTTAGTTATATTTGGA-CTGACTTAGATGGGAA 1 TATCACTTGTCATTTAGTTATATTTGGATC-GGCTTAGATGGGAA * 90072 TTTCACT 1 TATCACT 90079 CGTTGAACAT Statistics Matches: 112, Mismatches: 23, Indels: 7 0.79 0.16 0.05 Matches are distributed among these distances: 42 1 0.01 43 33 0.29 44 77 0.69 45 1 0.01 ACGTcount: A:0.24, C:0.13, G:0.21, T:0.42 Consensus pattern (44 bp): TATCACTTGTCATTTAGTTATATTTGGATCGGCTTAGATGGGAA Found at i:93675 original size:12 final size:14 Alignment explanation

Indices: 93656--93710 Score: 71 Period size: 14 Copynumber: 4.1 Consensus size: 14 93646 AACTTGCATG 93656 ATAAATA-ATATAT 1 ATAAATATATATAT 93669 A-AAATA-ATATAT 1 ATAAATATATATAT * 93681 ATATATATATATAT 1 ATAAATATATATAT * 93695 ATATATATATATAT 1 ATAAATATATATAT 93709 AT 1 AT 93711 TTAATGTTTT Statistics Matches: 39, Mismatches: 1, Indels: 3 0.91 0.02 0.07 Matches are distributed among these distances: 12 12 0.31 13 5 0.13 14 22 0.56 ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44 Consensus pattern (14 bp): ATAAATATATATAT Found at i:93680 original size:2 final size:2 Alignment explanation

Indices: 93663--93710 Score: 73 Period size: 2 Copynumber: 25.0 Consensus size: 2 93653 ATGATAAATA * 93663 AT AT AT A- AA AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 93703 AT AT AT AT 1 AT AT AT AT 93711 TTAATGTTTT Statistics Matches: 43, Mismatches: 1, Indels: 4 0.90 0.02 0.08 Matches are distributed among these distances: 1 2 0.05 2 41 0.95 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (2 bp): AT Found at i:98062 original size:18 final size:18 Alignment explanation

Indices: 98022--98064 Score: 50 Period size: 18 Copynumber: 2.4 Consensus size: 18 98012 GGTCATAACC * * 98022 TGACCCGACCCGTTTACC 1 TGACCCGACCCGTTGACA * * 98040 CGACCCGACCTGTTGACA 1 TGACCCGACCCGTTGACA 98058 TGACCCG 1 TGACCCG 98065 TTGACCCGAC Statistics Matches: 20, Mismatches: 5, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 18 20 1.00 ACGTcount: A:0.19, C:0.42, G:0.21, T:0.19 Consensus pattern (18 bp): TGACCCGACCCGTTGACA Found at i:98075 original size:13 final size:13 Alignment explanation

Indices: 98041--98083 Score: 59 Period size: 13 Copynumber: 3.3 Consensus size: 13 98031 CCGTTTACCC * 98041 GACCCGACCTGTT 1 GACCCGACCCGTT ** 98054 GACATGACCCGTT 1 GACCCGACCCGTT 98067 GACCCGACCCGTT 1 GACCCGACCCGTT 98080 GACC 1 GACC 98084 GTTGACCGTT Statistics Matches: 25, Mismatches: 5, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 13 25 1.00 ACGTcount: A:0.19, C:0.40, G:0.23, T:0.19 Consensus pattern (13 bp): GACCCGACCCGTT Found at i:100225 original size:24 final size:24 Alignment explanation

Indices: 100197--100315 Score: 141 Period size: 24 Copynumber: 5.0 Consensus size: 24 100187 TTCGATTTGA 100197 ATTCTGATCTGATACTTGACATGG 1 ATTCTGATCTGATACTTGACATGG * 100221 TTTCTGATCTGATA-TCTGACATGG 1 ATTCTGATCTGATACT-TGACATGG * * * 100245 ATTATGATCGGATACTTGACTTGG 1 ATTCTGATCTGATACTTGACATGG * * 100269 ATTCTGATATGATACTTGACCTGG 1 ATTCTGATCTGATACTTGACATGG * * * 100293 ATTTTGATATGATACTTAACATG 1 ATTCTGATCTGATACTTGACATG 100316 AATTATGTTT Statistics Matches: 81, Mismatches: 12, Indels: 4 0.84 0.12 0.04 Matches are distributed among these distances: 23 1 0.01 24 79 0.98 25 1 0.01 ACGTcount: A:0.26, C:0.14, G:0.20, T:0.39 Consensus pattern (24 bp): ATTCTGATCTGATACTTGACATGG Found at i:100491 original size:43 final size:43 Alignment explanation

Indices: 100430--100524 Score: 181 Period size: 43 Copynumber: 2.2 Consensus size: 43 100420 GGGCCTTACT * 100430 TGGTGTGTTGGTGGGTGTATGGTTCTGGGGAACCTACACATTA 1 TGGTGTGTTGGTGGGTGTATGGTTCTGGGAAACCTACACATTA 100473 TGGTGTGTTGGTGGGTGTATGGTTCTGGGAAACCTACACATTA 1 TGGTGTGTTGGTGGGTGTATGGTTCTGGGAAACCTACACATTA 100516 TGGTGTGTT 1 TGGTGTGTT 100525 TGGTTGGAGG Statistics Matches: 51, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 43 51 1.00 ACGTcount: A:0.16, C:0.11, G:0.37, T:0.37 Consensus pattern (43 bp): TGGTGTGTTGGTGGGTGTATGGTTCTGGGAAACCTACACATTA Found at i:102508 original size:22 final size:23 Alignment explanation

Indices: 102483--102532 Score: 75 Period size: 23 Copynumber: 2.2 Consensus size: 23 102473 AAATTCAAAT * 102483 TATTTT-TTAGAATTATCTTTTG 1 TATTTTCTTAGAATTATCTTTAG * 102505 TATTTTCTTAGGATTATCTTTAG 1 TATTTTCTTAGAATTATCTTTAG 102528 TATTT 1 TATTT 102533 CTAGGGTTTT Statistics Matches: 25, Mismatches: 2, Indels: 1 0.89 0.07 0.04 Matches are distributed among these distances: 22 6 0.24 23 19 0.76 ACGTcount: A:0.22, C:0.06, G:0.10, T:0.62 Consensus pattern (23 bp): TATTTTCTTAGAATTATCTTTAG Found at i:113807 original size:27 final size:28 Alignment explanation

Indices: 113754--113808 Score: 67 Period size: 28 Copynumber: 2.0 Consensus size: 28 113744 ATTTTAAAAA * ** * 113754 TTGAGTGATGAAATTAAAAAGTTTAAAT 1 TTGAGTGATCAAAAGAAAAAGTATAAAT 113782 TTGAGTGATCAAAAGAAAAA-TATAAAT 1 TTGAGTGATCAAAAGAAAAAGTATAAAT 113809 GAAACTGAGT Statistics Matches: 23, Mismatches: 4, Indels: 1 0.82 0.14 0.04 Matches are distributed among these distances: 27 6 0.26 28 17 0.74 ACGTcount: A:0.51, C:0.02, G:0.16, T:0.31 Consensus pattern (28 bp): TTGAGTGATCAAAAGAAAAAGTATAAAT Found at i:115207 original size:21 final size:21 Alignment explanation

Indices: 115182--115229 Score: 78 Period size: 21 Copynumber: 2.3 Consensus size: 21 115172 CCTAATATTG 115182 CAATGTCAAAATTAGGTGCAA 1 CAATGTCAAAATTAGGTGCAA * 115203 CAATGACAAAATTAGGTGCAA 1 CAATGTCAAAATTAGGTGCAA * 115224 TAATGT 1 CAATGT 115230 TTGAAAATTA Statistics Matches: 24, Mismatches: 3, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 21 24 1.00 ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25 Consensus pattern (21 bp): CAATGTCAAAATTAGGTGCAA Found at i:119848 original size:21 final size:21 Alignment explanation

Indices: 119822--119861 Score: 80 Period size: 21 Copynumber: 1.9 Consensus size: 21 119812 CCTAATATTG 119822 CAATGTCAAAATTAGGTGCTA 1 CAATGTCAAAATTAGGTGCTA 119843 CAATGTCAAAATTAGGTGC 1 CAATGTCAAAATTAGGTGC 119862 AATAATGTTT Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 21 19 1.00 ACGTcount: A:0.38, C:0.15, G:0.20, T:0.28 Consensus pattern (21 bp): CAATGTCAAAATTAGGTGCTA Found at i:119868 original size:21 final size:21 Alignment explanation

Indices: 119822--119869 Score: 78 Period size: 21 Copynumber: 2.3 Consensus size: 21 119812 CCTAATATTG * 119822 CAATGTCAAAATTAGGTGCTA 1 CAATGTCAAAATTAGGTGCAA 119843 CAATGTCAAAATTAGGTGCAA 1 CAATGTCAAAATTAGGTGCAA * 119864 TAATGT 1 CAATGT 119870 TTGAAAATTA Statistics Matches: 25, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 21 25 1.00 ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29 Consensus pattern (21 bp): CAATGTCAAAATTAGGTGCAA Found at i:121220 original size:20 final size:20 Alignment explanation

Indices: 121197--121234 Score: 58 Period size: 20 Copynumber: 1.9 Consensus size: 20 121187 CGGTACTAAC 121197 CCTTGAGTATCGATACTCCA 1 CCTTGAGTATCGATACTCCA * * 121217 CCTTGGGTATTGATACTC 1 CCTTGAGTATCGATACTC 121235 TACAACTAAT Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 20 16 1.00 ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34 Consensus pattern (20 bp): CCTTGAGTATCGATACTCCA Found at i:125011 original size:28 final size:28 Alignment explanation

Indices: 124934--125014 Score: 74 Period size: 28 Copynumber: 2.8 Consensus size: 28 124924 GAAATGTTAG * 124934 AAGTTT-GTGGACTAATTTAGAACATATTCA 1 AAGTTTAG-GGACAAATTTA-AA-ATATTCA * * * * 124964 TAGTTTAGGGATAAAATTAAAATATTTA 1 AAGTTTAGGGACAAATTTAAAATATTCA * 124992 AAGTTTAGGGACCAATTTAAAAT 1 AAGTTTAGGGACAAATTTAAAAT 125015 GAGGGGTCAT Statistics Matches: 41, Mismatches: 9, Indels: 4 0.76 0.17 0.07 Matches are distributed among these distances: 28 25 0.61 29 2 0.05 30 13 0.32 31 1 0.02 ACGTcount: A:0.42, C:0.06, G:0.16, T:0.36 Consensus pattern (28 bp): AAGTTTAGGGACAAATTTAAAATATTCA Found at i:132579 original size:24 final size:24 Alignment explanation

Indices: 132547--132617 Score: 133 Period size: 24 Copynumber: 3.0 Consensus size: 24 132537 CCAGTCTCGT * 132547 GAGAATCAAAAAGGTACGTAACAC 1 GAGACTCAAAAAGGTACGTAACAC 132571 GAGACTCAAAAAGGTACGTAACAC 1 GAGACTCAAAAAGGTACGTAACAC 132595 GAGACTCAAAAAGGTACGTAACA 1 GAGACTCAAAAAGGTACGTAACA 132618 TATTCATATT Statistics Matches: 46, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 24 46 1.00 ACGTcount: A:0.48, C:0.18, G:0.21, T:0.13 Consensus pattern (24 bp): GAGACTCAAAAAGGTACGTAACAC Found at i:134289 original size:60 final size:59 Alignment explanation

Indices: 134217--134386 Score: 160 Period size: 60 Copynumber: 2.8 Consensus size: 59 134207 GGGGAAGTTA * ** * * * 134217 TTTGAATGTTCAAAATTTTGAGGACTAATTTAGAATTAGGGTCATTGTTTGGGGATGAAT 1 TTTGAATATTCAAAATTTT-AGGACTAATTTAGAAGGAGAGACATAGTTTGGGGATGAAT * * * * * 134277 TTTGAATATTCAAAATTTTAAGGGCCAATTTAGAAGGATAGACGTAGTTTGGGGATGTAT 1 TTTGAATATTCAAAATTTT-AGGACTAATTTAGAAGGAGAGACATAGTTTGGGGATGAAT * * * * * * 134337 TTAGAATATTTAAAAGTTTTAGGACTAATTTAAAATGTGAGTCATAGTTT 1 TTTGAATATTCAAAA-TTTTAGGACTAATTTAGAAGGAGAGACATAGTTT 134387 AAGGACTAAT Statistics Matches: 87, Mismatches: 22, Indels: 2 0.78 0.20 0.02 Matches are distributed among these distances: 60 83 0.95 61 4 0.05 ACGTcount: A:0.34, C:0.05, G:0.22, T:0.39 Consensus pattern (59 bp): TTTGAATATTCAAAATTTTAGGACTAATTTAGAAGGAGAGACATAGTTTGGGGATGAAT Found at i:135637 original size:19 final size:19 Alignment explanation

Indices: 135613--135651 Score: 69 Period size: 19 Copynumber: 2.1 Consensus size: 19 135603 CCCACTTAAT 135613 GCATTATAAGGCAAAGAGA 1 GCATTATAAGGCAAAGAGA * 135632 GCATTATAAGGCAACGAGA 1 GCATTATAAGGCAAAGAGA 135651 G 1 G 135652 TGCCTCCAGG Statistics Matches: 19, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 19 19 1.00 ACGTcount: A:0.44, C:0.13, G:0.28, T:0.15 Consensus pattern (19 bp): GCATTATAAGGCAAAGAGA Found at i:151627 original size:60 final size:61 Alignment explanation

Indices: 151563--151693 Score: 171 Period size: 60 Copynumber: 2.2 Consensus size: 61 151553 TACTCTATTT * * 151563 GACGAGAAGATGAGG-GAAAA-TCCTTCAATCGAAAAGAAGGGGGTGAAGAA-TACTTGAATC 1 GACGAGAAGA-GAGGTGAAAAGTACTTCAATCGAAAAGAAGGGGGTGAA-AAGTACTTCAATC * ** 151623 GACGAGAAG-GGGGTGAAAAGTACTTCAATCGACGAGAAGGGGGTGAAAAGTACTTCAATC 1 GACGAGAAGAGAGGTGAAAAGTACTTCAATCGAAAAGAAGGGGGTGAAAAGTACTTCAATC 151683 GACGAGAAGAG 1 GACGAGAAGAG 151694 GACGAAGAAC Statistics Matches: 62, Mismatches: 5, Indels: 7 0.84 0.07 0.09 Matches are distributed among these distances: 58 3 0.05 59 7 0.11 60 51 0.82 61 1 0.02 ACGTcount: A:0.40, C:0.12, G:0.33, T:0.15 Consensus pattern (61 bp): GACGAGAAGAGAGGTGAAAAGTACTTCAATCGAAAAGAAGGGGGTGAAAAGTACTTCAATC Found at i:151711 original size:30 final size:30 Alignment explanation

Indices: 151585--151691 Score: 171 Period size: 30 Copynumber: 3.6 Consensus size: 30 151575 AGGGAAAATC ** 151585 CTTCAATCGAAAAGAAGGGGGTGAAGAA-TA 1 CTTCAATCGACGAGAAGGGGGTGAA-AAGTA * 151615 CTTGAATCGACGAGAAGGGGGTGAAAAGTA 1 CTTCAATCGACGAGAAGGGGGTGAAAAGTA 151645 CTTCAATCGACGAGAAGGGGGTGAAAAGTA 1 CTTCAATCGACGAGAAGGGGGTGAAAAGTA 151675 CTTCAATCGACGAGAAG 1 CTTCAATCGACGAGAAG 151692 AGGACGAAGA Statistics Matches: 72, Mismatches: 4, Indels: 2 0.92 0.05 0.03 Matches are distributed among these distances: 29 2 0.03 30 70 0.97 ACGTcount: A:0.38, C:0.13, G:0.32, T:0.17 Consensus pattern (30 bp): CTTCAATCGACGAGAAGGGGGTGAAAAGTA Found at i:151720 original size:30 final size:29 Alignment explanation

Indices: 151607--151769 Score: 93 Period size: 30 Copynumber: 5.6 Consensus size: 29 151597 AGAAGGGGGT * * * * * 151607 GAAGAATACTTGAATCGACGAGAAGGGGGT 1 GAAGAATACTTCAATTGAAGAGAA-GAGGA * * * * 151637 GAA-AAGTACTTCAATCGACGAGAAGGGGGT 1 GAAGAA-TACTTCAATTGAAGAGAA-GAGGA * * 151667 GAA-AAGTACTTCAATCGACGAGAAGAGGA 1 GAAGAA-TACTTCAATTGAAGAGAAGAGGA * * 151696 CGAAGAACACTTCAATTGGAGAGAAGA--A 1 -GAAGAATACTTCAATTGAAGAGAAGAGGA * * 151724 GAAGAATACTCCAATTGAAGAGTAG-GGAA 1 GAAGAATACTTCAATTGAAGAGAAGAGG-A 151753 GGAAGAATACTTCAATT 1 -GAAGAATACTTCAATT 151770 TGCAAGAACA Statistics Matches: 114, Mismatches: 12, Indels: 14 0.81 0.09 0.10 Matches are distributed among these distances: 27 21 0.18 28 1 0.01 29 6 0.05 30 84 0.74 31 2 0.02 ACGTcount: A:0.42, C:0.12, G:0.29, T:0.17 Consensus pattern (29 bp): GAAGAATACTTCAATTGAAGAGAAGAGGA Found at i:151721 original size:60 final size:60 Alignment explanation

Indices: 151563--151711 Score: 160 Period size: 60 Copynumber: 2.5 Consensus size: 60 151553 TACTCTATTT * * * ** * 151563 GACGAGAAGATGAGGGAAAATC-CTTCAATCGAAAAGAAGGGGGTGAAGAATACTTGAATC 1 GACGAGAAGAGGA-CGAAAAGCACTTCAATCGACGAGAAGGGGGTGAAGAATACTTCAATC * ** * 151623 GACGAGAAGGGGGTGAAAAGTACTTCAATCGACGAGAAGGGGGTGAA-AAGTACTTCAATC 1 GACGAGAAGAGGACGAAAAGCACTTCAATCGACGAGAAGGGGGTGAAGAA-TACTTCAATC 151683 GACGAGAAGAGGACGAAGAA-CACTTCAAT 1 GACGAGAAGAGGACGAA-AAGCACTTCAAT 151712 TGGAGAGAAG Statistics Matches: 73, Mismatches: 13, Indels: 6 0.79 0.14 0.07 Matches are distributed among these distances: 59 7 0.10 60 64 0.88 61 2 0.03 ACGTcount: A:0.40, C:0.13, G:0.31, T:0.15 Consensus pattern (60 bp): GACGAGAAGAGGACGAAAAGCACTTCAATCGACGAGAAGGGGGTGAAGAATACTTCAATC Found at i:151971 original size:16 final size:16 Alignment explanation

Indices: 151920--151971 Score: 54 Period size: 16 Copynumber: 3.2 Consensus size: 16 151910 GTTTACTATC 151920 TAAATTTATTAAT-TTT 1 TAAATTT-TTAATATTT * * 151936 GATATATTTTAATA-TT 1 TAAAT-TTTTAATATTT 151952 TAAATTTTTAATATTT 1 TAAATTTTTAATATTT 151968 TAAA 1 TAAA 151972 ATTATATTTA Statistics Matches: 29, Mismatches: 4, Indels: 6 0.74 0.10 0.15 Matches are distributed among these distances: 15 8 0.28 16 19 0.66 17 2 0.07 ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58 Consensus pattern (16 bp): TAAATTTTTAATATTT Found at i:161423 original size:30 final size:30 Alignment explanation

Indices: 161387--161583 Score: 238 Period size: 30 Copynumber: 6.6 Consensus size: 30 161377 AGGGAAAATC 161387 CTTCAATCGAC-AGGAAGGGGGTGAAGAATA 1 CTTCAATCGACGA-GAAGGGGGTGAAGAATA * * 161417 CTTCAATGGATGAGAAGGGGGTGAA-AAGTA 1 CTTCAATCGACGAGAAGGGGGTGAAGAA-TA 161447 CTTCAATCGACGAGAAGGGGGTGAA-AAGTA 1 CTTCAATCGACGAGAAGGGGGTGAAGAA-TA * * 161477 CTTCAATCGACGAGAAGGGGGTGAAGGACA 1 CTTCAATCGACGAGAAGGGGGTGAAGAATA * * 161507 CTTCAATCGAAGAGAAGGGGGTGACGAATA 1 CTTCAATCGACGAGAAGGGGGTGAAGAATA * ** * 161537 CTTCAATCGACGAGAAGAGGACGAAGAACA 1 CTTCAATCGACGAGAAGGGGGTGAAGAATA * * 161567 CTTCAATTGAAGAGAAG 1 CTTCAATCGACGAGAAG 161584 AAGAAGAAGA Statistics Matches: 146, Mismatches: 18, Indels: 6 0.86 0.11 0.04 Matches are distributed among these distances: 29 2 0.01 30 142 0.97 31 2 0.01 ACGTcount: A:0.38, C:0.14, G:0.32, T:0.16 Consensus pattern (30 bp): CTTCAATCGACGAGAAGGGGGTGAAGAATA Found at i:161570 original size:90 final size:90 Alignment explanation

Indices: 161365--161583 Score: 248 Period size: 90 Copynumber: 2.4 Consensus size: 90 161355 TACTCTATTT * * * * * * 161365 GACGAGAAGATGAGGGAAAATC-CTTCAATCGAC-AGGAAGGGGGTGAAGAATACTTCAATGGAT 1 GACGAGAAGAGGA-CGAAAAGCACTTCAATCGACGA-GAAGGGGGTGAAGAACACTTCAATCGAA 161428 GAGAAGGGGGTGAAAAGTACTTCAATC 64 GAGAAGGGGGTGAAAAGTACTTCAATC * ** * * 161455 GACGAGAAGGGGGTGAAAAGTACTTCAATCGACGAGAAGGGGGTGAAGGACACTTCAATCGAAGA 1 GACGAGAAGAGGACGAAAAGCACTTCAATCGACGAGAAGGGGGTGAAGAACACTTCAATCGAAGA * 161520 GAAGGGGGTGACGAA-TACTTCAATC 66 GAAGGGGGTGA-AAAGTACTTCAATC * * 161545 GACGAGAAGAGGACGAAGAA-CACTTCAATTGAAGAGAAG 1 GACGAGAAGAGGACGAA-AAGCACTTCAATCGACGAGAAG 161584 AAGAAGAAGA Statistics Matches: 108, Mismatches: 17, Indels: 8 0.81 0.13 0.06 Matches are distributed among these distances: 89 5 0.05 90 98 0.91 91 5 0.05 ACGTcount: A:0.38, C:0.13, G:0.33, T:0.16 Consensus pattern (90 bp): GACGAGAAGAGGACGAAAAGCACTTCAATCGACGAGAAGGGGGTGAAGAACACTTCAATCGAAGA GAAGGGGGTGAAAAGTACTTCAATC Found at i:161596 original size:33 final size:33 Alignment explanation

Indices: 161549--161613 Score: 94 Period size: 33 Copynumber: 2.0 Consensus size: 33 161539 TCAATCGACG * * * 161549 AGAAGAGGACGAAGAACACTTCAATTGAAGAGA 1 AGAAGAAGAAGAAGAACACTCCAATTGAAGAGA * 161582 AGAAGAAGAAGAAGAATACTCCAATTGAAGAG 1 AGAAGAAGAAGAAGAACACTCCAATTGAAGAG 161614 TAGGGAAGGA Statistics Matches: 28, Mismatches: 4, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 33 28 1.00 ACGTcount: A:0.51, C:0.11, G:0.26, T:0.12 Consensus pattern (33 bp): AGAAGAAGAAGAAGAACACTCCAATTGAAGAGA Found at i:161626 original size:33 final size:34 Alignment explanation

Indices: 161549--161627 Score: 92 Period size: 33 Copynumber: 2.4 Consensus size: 34 161539 TCAATCGACG * * 161549 AGAAG-AGGACGAAGAACACTTCAATTGAAGAGA 1 AGAAGAAGGAAGAAGAACACTCCAATTGAAGAGA * * 161582 AGAAGAA-GAAGAAGAATACTCCAATTGAAGAGT 1 AGAAGAAGGAAGAAGAACACTCCAATTGAAGAGA * 161615 AG-GGAAGGAAGAA 1 AGAAGAAGGAAGAA 161628 TACTTTAATT Statistics Matches: 39, Mismatches: 5, Indels: 4 0.81 0.10 0.08 Matches are distributed among these distances: 32 3 0.08 33 35 0.90 34 1 0.03 ACGTcount: A:0.51, C:0.09, G:0.29, T:0.11 Consensus pattern (34 bp): AGAAGAAGGAAGAAGAACACTCCAATTGAAGAGA Found at i:161839 original size:16 final size:15 Alignment explanation

Indices: 161779--161835 Score: 62 Period size: 16 Copynumber: 3.7 Consensus size: 15 161769 AAATTGTGTA * 161779 TTTAATATCTAAATT 1 TTTAATATTTAAATT * 161794 TATTAAT-TTTGATATAT 1 T-TTAATATTT-AAAT-T 161811 TTTAATATTTAAATT 1 TTTAATATTTAAATT 161826 TTTAATATTT 1 TTTAATATTT 161836 TAAAATTATA Statistics Matches: 35, Mismatches: 3, Indels: 8 0.76 0.07 0.17 Matches are distributed among these distances: 15 14 0.40 16 16 0.46 17 5 0.14 ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60 Consensus pattern (15 bp): TTTAATATTTAAATT Found at i:162075 original size:15 final size:15 Alignment explanation

Indices: 162055--162084 Score: 51 Period size: 15 Copynumber: 2.0 Consensus size: 15 162045 ATTAATATAT 162055 AATTAAAAATAAAAA 1 AATTAAAAATAAAAA * 162070 AATTAAATATAAAAA 1 AATTAAAAATAAAAA 162085 TTAGAGTGAT Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 15 14 1.00 ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23 Consensus pattern (15 bp): AATTAAAAATAAAAA Found at i:164303 original size:49 final size:49 Alignment explanation

Indices: 164246--164341 Score: 192 Period size: 49 Copynumber: 2.0 Consensus size: 49 164236 TATAAGTCTC 164246 GCTAAGCTTTAAAATTAATCATTTGTTTCCAAATGCTTCAACTGCACTA 1 GCTAAGCTTTAAAATTAATCATTTGTTTCCAAATGCTTCAACTGCACTA 164295 GCTAAGCTTTAAAATTAATCATTTGTTTCCAAATGCTTCAACTGCAC 1 GCTAAGCTTTAAAATTAATCATTTGTTTCCAAATGCTTCAACTGCAC 164342 AATTTATCAA Statistics Matches: 47, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 49 47 1.00 ACGTcount: A:0.32, C:0.21, G:0.10, T:0.36 Consensus pattern (49 bp): GCTAAGCTTTAAAATTAATCATTTGTTTCCAAATGCTTCAACTGCACTA Found at i:178601 original size:30 final size:30 Alignment explanation

Indices: 178567--178783 Score: 213 Period size: 30 Copynumber: 7.2 Consensus size: 30 178557 AGGGAAAATC * 178567 CTTCAATCGACAAGAAGGGGGTGAAGAATA 1 CTTCAATCGACGAGAAGGGGGTGAAGAATA * 178597 CTTCAATCGACGAGAAAGGGGTGAA-AAGTA 1 CTTCAATCGACGAGAAGGGGGTGAAGAA-TA * 178627 CTTCAATCGACGAGAAGGGGGTGAAGAACA 1 CTTCAATCGACGAGAAGGGGGTGAAGAATA * * * 178657 CTTCAATCGAAGAGAAGGAGGTGACGAATA 1 CTTCAATCGACGAGAAGGGGGTGAAGAATA * ** * 178687 CTTCAATCGACGAGAAGAGGACGAAGAACA 1 CTTCAATCGACGAGAAGGGGGTGAAGAATA * * ** ** 178717 CTTCAATTGAAGAGAAGAAGAAGAAGAATA 1 CTTCAATCGACGAGAAGGGGGTGAAGAATA * * * * * 178747 CTCCAATTGAAGAGTAGGGAAG-GAAGAATA 1 CTTCAATCGACGAGAAGGG-GGTGAAGAATA 178777 CTTCAAT 1 CTTCAAT 178784 TTGCAAGAAG Statistics Matches: 157, Mismatches: 27, Indels: 6 0.83 0.14 0.03 Matches are distributed among these distances: 29 2 0.01 30 153 0.97 31 2 0.01 ACGTcount: A:0.42, C:0.14, G:0.28, T:0.16 Consensus pattern (30 bp): CTTCAATCGACGAGAAGGGGGTGAAGAATA Found at i:178612 original size:60 final size:60 Alignment explanation

Indices: 178548--178734 Score: 236 Period size: 60 Copynumber: 3.1 Consensus size: 60 178538 TCTATTTGAC * * * * 178548 GAGAAGATGAGG-GAAAATCCTTCAATCGACAAGAAGGGGGTGAAGAATACTTCAATCGAC 1 GAGAAGA-GAGGTGAAAATACTTCAATCGACGAGAAGGGGGTGAAGAACACTTCAATCGAA * 178608 GAGAA-AGGGGTGAAAAGTACTTCAATCGACGAGAAGGGGGTGAAGAACACTTCAATCGAA 1 GAGAAGAGAGGTGAAAA-TACTTCAATCGACGAGAAGGGGGTGAAGAACACTTCAATCGAA * * ** * 178668 GAGAAG-GAGGTGACGAATACTTCAATCGACGAGAAGAGGACGAAGAACACTTCAATTGAA 1 GAGAAGAGAGGTGA-AAATACTTCAATCGACGAGAAGGGGGTGAAGAACACTTCAATCGAA 178728 GAGAAGA 1 GAGAAGA 178735 AGAAGAAGAA Statistics Matches: 111, Mismatches: 11, Indels: 9 0.85 0.08 0.07 Matches are distributed among these distances: 58 3 0.03 59 6 0.05 60 100 0.90 61 2 0.02 ACGTcount: A:0.41, C:0.14, G:0.30, T:0.15 Consensus pattern (60 bp): GAGAAGAGAGGTGAAAATACTTCAATCGACGAGAAGGGGGTGAAGAACACTTCAATCGAA Found at i:181493 original size:14 final size:15 Alignment explanation

Indices: 181476--181504 Score: 51 Period size: 15 Copynumber: 2.0 Consensus size: 15 181466 TACATGATAT 181476 GCAT-AAACATAAGA 1 GCATAAAACATAAGA 181490 GCATAAAACATAAGA 1 GCATAAAACATAAGA 181505 TATATGATAT Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 14 4 0.29 15 10 0.71 ACGTcount: A:0.59, C:0.14, G:0.14, T:0.14 Consensus pattern (15 bp): GCATAAAACATAAGA Found at i:181830 original size:22 final size:21 Alignment explanation

Indices: 181777--181840 Score: 74 Period size: 21 Copynumber: 3.0 Consensus size: 21 181767 AGTCGAGGGT * * 181777 TTCATAGGTCTTTTGGGACAA 1 TTCATAGGTCCTTCGGGACAA * 181798 CTCATAGGTCCTTCGGGACATA 1 TTCATAGGTCCTTCGGGACA-A * * 181820 TTCACAGGTCCTTCGAGACAA 1 TTCATAGGTCCTTCGGGACAA 181841 ATTTCATATG Statistics Matches: 36, Mismatches: 6, Indels: 2 0.82 0.14 0.05 Matches are distributed among these distances: 21 18 0.50 22 18 0.50 ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30 Consensus pattern (21 bp): TTCATAGGTCCTTCGGGACAA Found at i:182710 original size:7 final size:7 Alignment explanation

Indices: 182689--182724 Score: 54 Period size: 7 Copynumber: 5.1 Consensus size: 7 182679 TATTCATCGT 182689 ACTATTC 1 ACTATTC * 182696 ACTGTTC 1 ACTATTC * 182703 ATTATTC 1 ACTATTC 182710 ACTATTC 1 ACTATTC 182717 ACTATTC 1 ACTATTC 182724 A 1 A 182725 TACAGTATTT Statistics Matches: 25, Mismatches: 4, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 7 25 1.00 ACGTcount: A:0.28, C:0.25, G:0.03, T:0.44 Consensus pattern (7 bp): ACTATTC Found at i:187202 original size:14 final size:15 Alignment explanation

Indices: 187185--187213 Score: 51 Period size: 15 Copynumber: 2.0 Consensus size: 15 187175 TTACATGATA 187185 TGCAT-AAACATAAG 1 TGCATAAAACATAAG 187199 TGCATAAAACATAAG 1 TGCATAAAACATAAG 187214 ATATATGATA Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 14 5 0.36 15 9 0.64 ACGTcount: A:0.52, C:0.14, G:0.14, T:0.21 Consensus pattern (15 bp): TGCATAAAACATAAG Found at i:187540 original size:22 final size:21 Alignment explanation

Indices: 187487--187550 Score: 74 Period size: 21 Copynumber: 3.0 Consensus size: 21 187477 AGTCGAGGGT * * 187487 TTCATAGGTCTTTTGGGACAA 1 TTCATAGGTCCTTCGGGACAA * 187508 CTCATAGGTCCTTCGGGACATA 1 TTCATAGGTCCTTCGGGACA-A * * 187530 TTCACAGGTCCTTCGAGACAA 1 TTCATAGGTCCTTCGGGACAA 187551 ATTTCATATG Statistics Matches: 36, Mismatches: 6, Indels: 2 0.82 0.14 0.05 Matches are distributed among these distances: 21 18 0.50 22 18 0.50 ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30 Consensus pattern (21 bp): TTCATAGGTCCTTCGGGACAA Found at i:188422 original size:7 final size:7 Alignment explanation

Indices: 188412--188451 Score: 53 Period size: 7 Copynumber: 5.7 Consensus size: 7 188402 CTATTCACTG 188412 TTCATTA 1 TTCATTA * 188419 TTCAATA 1 TTCATTA * 188426 TTCACTA 1 TTCATTA 188433 TTCATTA 1 TTCATTA * 188440 TTCACTA 1 TTCATTA 188447 TTCAT 1 TTCAT 188452 ACATTATTTT Statistics Matches: 28, Mismatches: 5, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 7 28 1.00 ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50 Consensus pattern (7 bp): TTCATTA Found at i:188429 original size:21 final size:21 Alignment explanation

Indices: 188403--188450 Score: 78 Period size: 21 Copynumber: 2.3 Consensus size: 21 188393 TTCATCGTAC * 188403 TATTCACTGTTCATTATTCAA 1 TATTCACTATTCATTATTCAA * 188424 TATTCACTATTCATTATTCAC 1 TATTCACTATTCATTATTCAA 188445 TATTCA 1 TATTCA 188451 TACATTATTT Statistics Matches: 25, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 21 25 1.00 ACGTcount: A:0.29, C:0.21, G:0.02, T:0.48 Consensus pattern (21 bp): TATTCACTATTCATTATTCAA Found at i:188451 original size:14 final size:14 Alignment explanation

Indices: 188401--188451 Score: 66 Period size: 14 Copynumber: 3.6 Consensus size: 14 188391 TATTCATCGT * * 188401 ACTATTCACTGTTC 1 ACTATTCATTATTC * * 188415 ATTATTCAATATTC 1 ACTATTCATTATTC 188429 ACTATTCATTATTC 1 ACTATTCATTATTC 188443 ACTATTCAT 1 ACTATTCAT 188452 ACATTATTTT Statistics Matches: 32, Mismatches: 5, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 14 32 1.00 ACGTcount: A:0.29, C:0.22, G:0.02, T:0.47 Consensus pattern (14 bp): ACTATTCATTATTC Found at i:189639 original size:18 final size:18 Alignment explanation

Indices: 189616--189654 Score: 78 Period size: 18 Copynumber: 2.2 Consensus size: 18 189606 CATTGGATAA 189616 TCGCAAGCCAATGTTTAT 1 TCGCAAGCCAATGTTTAT 189634 TCGCAAGCCAATGTTTAT 1 TCGCAAGCCAATGTTTAT 189652 TCG 1 TCG 189655 ATAACATAAA Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 18 21 1.00 ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33 Consensus pattern (18 bp): TCGCAAGCCAATGTTTAT Found at i:189881 original size:50 final size:50 Alignment explanation

Indices: 189825--189925 Score: 202 Period size: 50 Copynumber: 2.0 Consensus size: 50 189815 ATTATATGTT 189825 AGTATCCAACTAACATAATCTAAGCTTAAATATTAATTCAATAGAAACAA 1 AGTATCCAACTAACATAATCTAAGCTTAAATATTAATTCAATAGAAACAA 189875 AGTATCCAACTAACATAATCTAAGCTTAAATATTAATTCAATAGAAACAA 1 AGTATCCAACTAACATAATCTAAGCTTAAATATTAATTCAATAGAAACAA 189925 A 1 A 189926 AATTGAAACT Statistics Matches: 51, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 50 51 1.00 ACGTcount: A:0.50, C:0.16, G:0.06, T:0.28 Consensus pattern (50 bp): AGTATCCAACTAACATAATCTAAGCTTAAATATTAATTCAATAGAAACAA Found at i:191848 original size:16 final size:18 Alignment explanation

Indices: 191826--191875 Score: 77 Period size: 16 Copynumber: 2.8 Consensus size: 18 191816 TACACTGCAG 191826 GGTGTATCGGTACACC-A 1 GGTGTATCGGTACACCAA 191843 -GTGTATCGGTACACCATA 1 GGTGTATCGGTACACCA-A 191861 GGTGTATCGGTACAC 1 GGTGTATCGGTACAC 191876 TAATTGTATT Statistics Matches: 30, Mismatches: 0, Indels: 4 0.88 0.00 0.12 Matches are distributed among these distances: 16 15 0.50 18 1 0.03 19 14 0.47 ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26 Consensus pattern (18 bp): GGTGTATCGGTACACCAA Found at i:192947 original size:21 final size:20 Alignment explanation

Indices: 192904--192948 Score: 56 Period size: 20 Copynumber: 2.2 Consensus size: 20 192894 AACTAGAATT * 192904 ATTTATTTAATAATAATTTA 1 ATTTAATTAATAATAATTTA 192924 ATTTAATT-ATAATACATATTA 1 ATTTAATTAATAATA-AT-TTA 192945 ATTT 1 ATTT 192949 CAAAATATTA Statistics Matches: 22, Mismatches: 1, Indels: 3 0.85 0.04 0.12 Matches are distributed among these distances: 19 6 0.27 20 9 0.41 21 7 0.32 ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53 Consensus pattern (20 bp): ATTTAATTAATAATAATTTA Found at i:193909 original size:64 final size:60 Alignment explanation

Indices: 193835--193954 Score: 143 Period size: 61 Copynumber: 1.9 Consensus size: 60 193825 ACTATGACTA * * * * 193835 CATTCTAAATTAGT-CCTAAATCAACTTTTTGAACATTTTAGTTTCATCCACAAATTATATCCTT 1 CATTCTAAATTAGTCCCCAAA-C-A-TTTTT-AACATTTCAATATCATCC-CAAATTATATCCTT * 193899 CATTCTAAATTGGTCCCCAAACATTTTTAACATTTCAATATCATCCCAAATTATAT 1 CATTCTAAATTAGTCCCCAAACATTTTTAACATTTCAATATCATCCCAAATTATAT 193955 ATATGTATAT Statistics Matches: 50, Mismatches: 5, Indels: 6 0.82 0.08 0.10 Matches are distributed among these distances: 60 10 0.20 61 15 0.30 62 5 0.10 63 1 0.02 64 14 0.28 65 5 0.10 ACGTcount: A:0.34, C:0.22, G:0.04, T:0.40 Consensus pattern (60 bp): CATTCTAAATTAGTCCCCAAACATTTTTAACATTTCAATATCATCCCAAATTATATCCTT Found at i:194175 original size:60 final size:59 Alignment explanation

Indices: 194098--194246 Score: 192 Period size: 60 Copynumber: 2.5 Consensus size: 59 194088 AATCGGAAGG * * * 194098 TTTAAAAGTTTAGGGACTAATTTAGAATAAGGGCCATAGTTTAAGGATAAAATTGG-AATA 1 TTTAAAAGTTTAAGGACTAATTTAGAATAA-GACCATAATTTAAGGATAAAA-TGGTAATA * * * 194158 TTTAAAAGTTTAAGGACTAATTTAGAATTAAGATCATAATTTGAGGATGAAATGGTAATA 1 TTTAAAAGTTTAAGGACTAATTTAGAA-TAAGACCATAATTTAAGGATAAAATGGTAATA * * 194218 TTCAAAAGTTTAAGAACTAATTTAGAATA 1 TTTAAAAGTTTAAGGACTAATTTAGAATA 194247 GGGACATGTG Statistics Matches: 79, Mismatches: 8, Indels: 5 0.86 0.09 0.05 Matches are distributed among these distances: 59 5 0.06 60 71 0.90 61 3 0.04 ACGTcount: A:0.44, C:0.05, G:0.18, T:0.34 Consensus pattern (59 bp): TTTAAAAGTTTAAGGACTAATTTAGAATAAGACCATAATTTAAGGATAAAATGGTAATA Found at i:194185 original size:29 final size:31 Alignment explanation

Indices: 194097--194185 Score: 76 Period size: 29 Copynumber: 2.9 Consensus size: 31 194087 AAATCGGAAG * 194097 GTTTAAAAGTTTAGGGACTAATTTAGAATAA 1 GTTTAAAAGTTTAAGGACTAATTTAGAATAA **** * * * 194128 GGGCCATAGTTTAAGGA-TAAAATTGGAAT-A 1 GTTTAAAAGTTTAAGGACT-AATTTAGAATAA 194158 -TTTAAAAGTTTAAGGACTAATTTAGAAT 1 GTTTAAAAGTTTAAGGACTAATTTAGAAT 194186 TAAGATCATA Statistics Matches: 41, Mismatches: 15, Indels: 6 0.66 0.24 0.10 Matches are distributed among these distances: 29 19 0.46 30 3 0.07 31 19 0.46 ACGTcount: A:0.42, C:0.04, G:0.20, T:0.34 Consensus pattern (31 bp): GTTTAAAAGTTTAAGGACTAATTTAGAATAA Found at i:198496 original size:13 final size:13 Alignment explanation

Indices: 198478--198502 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 198468 TATATATATA 198478 TAATTATACATTG 1 TAATTATACATTG 198491 TAATTATACATT 1 TAATTATACATT 198503 ATAACTAAGG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48 Consensus pattern (13 bp): TAATTATACATTG Found at i:201309 original size:3 final size:3 Alignment explanation

Indices: 201303--201395 Score: 179 Period size: 3 Copynumber: 31.3 Consensus size: 3 201293 CTCCTCCTCC 201303 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT 1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT 201351 TCT TC- TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T 1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T 201396 GTTGGAAAGC Statistics Matches: 89, Mismatches: 0, Indels: 2 0.98 0.00 0.02 Matches are distributed among these distances: 2 2 0.02 3 87 0.98 ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67 Consensus pattern (3 bp): TCT Found at i:203816 original size:32 final size:32 Alignment explanation

Indices: 203733--203836 Score: 145 Period size: 32 Copynumber: 3.2 Consensus size: 32 203723 GTCTATGGAA * * * 203733 TTCGGGTCGGGTCAAAATCAAATCGGTTGGGT 1 TTCGGGTCGAGTCAAAATCGAATCGGTTGGTT 203765 TTCGGGTCGAGTCAAAATCGAATCGGTTGGTT 1 TTCGGGTCGAGTCAAAATCGAATCGGTTGGTT * * ** 203797 TTCGGGTCGAGTCAAAATCGGATCAGTTAATT 1 TTCGGGTCGAGTCAAAATCGAATCGGTTGGTT 203829 TTCGGGTC 1 TTCGGGTC 203837 AGGTTAATAT Statistics Matches: 65, Mismatches: 7, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 32 65 1.00 ACGTcount: A:0.22, C:0.16, G:0.31, T:0.31 Consensus pattern (32 bp): TTCGGGTCGAGTCAAAATCGAATCGGTTGGTT Found at i:205030 original size:26 final size:26 Alignment explanation

Indices: 204962--205040 Score: 133 Period size: 26 Copynumber: 3.0 Consensus size: 26 204952 CCTATTTTAT * 204962 ATTAGTGGTGCATTTCAATACATGTC 1 ATTAGTGGTGCATTTCTATACATGTC 204988 ATTAGTGGTGCATTTCTATACATGTC 1 ATTAGTGGTGCATTTCTATACATGTC 205014 ATTAGTGGTGCATTTCTATGA-ATGTC 1 ATTAGTGGTGCATTTCTAT-ACATGTC 205040 A 1 A 205041 CTCATTGTAG Statistics Matches: 51, Mismatches: 1, Indels: 2 0.94 0.02 0.04 Matches are distributed among these distances: 26 50 0.98 27 1 0.02 ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41 Consensus pattern (26 bp): ATTAGTGGTGCATTTCTATACATGTC Done.