genome.fa.s6502.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006502.1 Hibiscus syriacus cultivar Beakdansim tig00015825_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68800

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2937--2987	22	2.3	22	79	3	57	52	7	1	37	1.42
3304--3332	13	2.3	13	94	5	51	75	0	0	24	0.80
4892--4917	13	2.0	13	100	0	52	15	23	23	38	1.92
15558--15603	22	2.1	22	91	0	74	19	28	13	39	1.89
16600--16651	23	2.3	22	83	9	61	15	13	0	71	1.15
28281--28319	2	19.5	2	100	0	78	51	0	0	48	1.00
31813--31848	3	12.3	3	88	5	56	27	0	0	72	0.85
31815--31848	17	2.0	17	94	0	59	26	0	0	73	0.83
31870--31895	3	8.7	3	100	0	52	34	0	0	65	0.93
32008--32122	23	5.0	23	82	2	133	21	15	18	44	1.87
32008--32125	45	2.6	45	85	6	148	22	15	17	44	1.86
33653--33704	26	2.0	26	88	0	77	9	26	21	42	1.83
43530--43579	15	3.2	15	77	8	55	32	0	10	58	1.31
43792--43829	19	2.0	19	90	10	60	28	13	21	36	1.91
43830--43899	23	3.0	23	78	0	68	22	15	20	41	1.90
44090--44207	61	1.9	62	89	6	188	26	5	17	50	1.66
44089--44224	61	2.2	61	84	8	181	27	4	16	51	1.64
53861--53918	21	2.6	23	74	20	59	36	3	0	60	1.14
53873--53918	21	2.1	22	84	11	60	36	2	0	60	1.09
55374--55404	14	2.2	14	94	0	53	29	0	9	61	1.28
55263--55667	203	2.0	204	90	2	636	39	7	13	39	1.73
55860--55912	23	2.3	23	90	3	81	54	5	5	33	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55921--56005	44	1.9	45	92	2	145	27	10	23	38	1.87
56270--56354	38	2.2	38	83	8	102	21	10	25	42	1.85
58269--58302	14	2.4	14	100	0	68	23	11	14	50	1.76
60596--60680	20	4.0	20	76	16	89	42	10	23	23	1.85
60569--60777	46	4.6	46	75	14	200	46	9	18	25	1.79
60569--60647	26	3.3	25	65	22	53	45	11	16	26	1.81
60672--60737	26	2.5	26	92	0	105	46	10	18	24	1.80
66922--66974	20	2.7	19	91	5	79	41	18	22	16	1.90
67088--67134	22	2.1	23	84	4	60	63	2	6	27	1.30

Tables:   1

The End!