genome.fa.s6503.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006503.1 Hibiscus syriacus cultivar Beakdansim tig00015826_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108824

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5614--5662	24	2.0	24	92	0	80	24	6	16	53	1.66
5633--5702	31	2.3	31	84	0	86	27	5	15	51	1.66
5618--5669	24	2.2	24	85	0	68	28	3	17	50	1.64
5721--6175	155	2.9	154	88	2	662	21	11	30	36	1.89
8057--8120	18	3.6	18	93	0	101	18	50	20	10	1.77
8079--8126	13	3.3	13	75	25	51	18	45	22	12	1.83
10552--10603	24	2.2	24	82	0	59	26	7	15	50	1.71
10591--10619	14	2.1	14	100	0	58	34	6	13	44	1.71
10567--10645	38	2.1	38	82	0	95	25	8	15	50	1.72
14971--15065	24	4.0	24	73	5	75	22	12	14	50	1.76
21658--21713	20	2.8	20	86	2	78	35	19	8	35	1.83
23583--23622	20	2.0	20	95	0	71	30	15	22	32	1.94
23588--23628	20	2.2	18	87	12	57	29	17	21	31	1.96
23668--23733	20	3.3	21	73	12	59	36	22	10	30	1.88
29189--29228	21	1.9	21	85	10	55	35	10	2	52	1.48
31158--31206	19	2.7	17	84	9	53	26	20	28	24	1.99
31158--31367	64	3.3	64	76	11	182	28	18	23	30	1.97
31348--31387	21	1.9	21	94	0	71	22	15	30	32	1.94
33581--33620	20	2.0	20	90	0	62	32	15	20	32	1.93
33667--33731	20	3.3	20	77	10	71	38	21	7	32	1.82
37025--37070	20	2.3	20	84	0	56	34	19	15	30	1.93
37424--37461	13	2.9	13	84	7	51	7	26	0	65	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42632--42672	22	1.9	21	85	5	55	48	12	9	29	1.72
54292--54387	39	2.5	39	80	0	111	31	25	23	19	1.98
54373--54449	39	2.0	39	81	0	91	28	22	27	22	1.99
55951--56016	23	2.9	23	95	0	114	36	18	16	28	1.93
56046--56078	14	2.3	15	94	5	59	21	18	18	42	1.89
56635--56784	46	3.3	46	77	8	137	29	17	20	33	1.95
58228--58256	15	2.0	15	93	6	51	58	13	13	13	1.63
58263--58307	24	1.9	23	82	13	56	40	6	13	40	1.71
58339--58380	21	1.9	23	85	9	61	45	7	21	26	1.77
70957--71000	20	2.2	20	83	0	52	61	4	9	25	1.45
75333--75363	2	15.5	2	93	0	53	54	0	0	45	0.99
77689--77750	21	3.2	21	63	25	55	38	12	22	25	1.90
77669--77791	36	3.4	36	89	4	185	40	13	20	25	1.89
77780--77851	30	2.4	30	81	4	83	38	8	16	36	1.79
77829--77931	37	2.8	37	82	4	109	40	12	16	30	1.85
81058--81092	18	1.9	18	88	0	52	28	14	0	57	1.38
82386--82456	12	5.3	13	79	18	83	12	23	45	18	1.84
82392--82443	17	3.4	17	75	25	69	9	25	46	19	1.80
83355--83409	22	2.5	22	100	0	110	23	12	27	36	1.91
84006--84074	32	2.2	30	82	14	79	1	20	7	71	1.18
84006--84097	16	6.0	15	72	20	66	2	19	5	72	1.14
87116--87237	61	2.0	63	82	9	153	28	29	26	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90718--90756	2	19.5	2	100	0	78	51	0	0	48	1.00
95964--95996	2	16.5	2	100	0	66	51	0	0	48	1.00
98684--98747	27	2.4	27	84	5	87	70	0	9	20	1.14
98751--98856	2	52.5	2	80	12	110	50	1	4	42	1.34
102440--102476	2	18.5	2	100	0	74	51	0	0	48	1.00
107328--107371	23	1.9	23	85	0	61	13	22	13	50	1.77

Tables:   1

The End!