genome.fa.s6504.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006504.1 Hibiscus syriacus cultivar Beakdansim tig00015828_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50552

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4510--4560	19	2.7	19	85	8	70	25	15	35	23	1.94
4404--4610	65	3.2	64	79	13	219	26	17	25	30	1.97
9370--9420	19	2.7	19	93	0	84	23	23	29	23	1.99
9412--9566	64	2.4	64	82	2	186	32	15	20	31	1.94
11357--11787	219	2.0	219	91	0	700	25	14	38	20	1.91
12218--12392	38	4.9	35	79	16	171	49	4	8	38	1.51
12219--12392	74	2.4	74	88	4	248	50	4	8	37	1.51
12814--12861	14	3.0	15	80	19	53	12	4	2	81	0.93
14474--14511	13	2.8	14	96	4	69	15	23	21	39	1.92
17689--17746	20	2.6	22	86	10	75	29	20	22	27	1.99
20125--20231	34	3.3	33	75	10	112	26	22	4	46	1.71
20339--20548	48	4.4	48	83	0	249	32	26	15	25	1.96
20342--20548	96	2.2	96	85	0	288	32	26	15	25	1.95
22552--22599	15	3.0	15	87	9	60	43	0	2	54	1.12
24142--24179	19	2.0	19	89	0	58	28	15	7	47	1.74
26173--26376	64	3.2	62	76	14	182	34	19	19	27	1.95
26150--26316	66	2.5	62	81	11	165	33	19	19	27	1.96
27058--27121	30	2.1	30	82	5	76	20	18	26	34	1.96
30026--30063	20	1.9	20	84	10	51	28	13	2	55	1.51
31397--31435	6	6.5	6	84	0	51	53	12	2	30	1.52
31401--31443	12	3.6	12	77	0	50	46	18	2	32	1.62
31393--31443	24	2.1	24	92	0	84	47	15	3	33	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31403--31454	24	2.2	24	85	0	68	53	13	3	28	1.57
34003--34080	18	4.4	17	78	18	79	35	3	37	23	1.73
34003--34080	36	2.2	36	95	0	138	35	3	37	23	1.73
34369--35306	201	4.7	200	88	2	1382	33	14	11	40	1.82
40190--40239	22	2.4	21	81	15	59	44	2	0	54	1.11
42215--42647	180	2.4	181	86	5	592	29	15	12	42	1.83
43927--43974	16	2.8	18	82	17	59	25	0	43	31	1.55

Tables:   1

The End!