Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006505.1 Hibiscus syriacus cultivar Beakdansim tig00015834_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95247

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3425--3499
31
2.4
31
97
0
141
36
24
10
29
1.89
6384--6427
23
1.9
23
95
0
79
29
27
15
27
1.96
7813--7874
18
3.1
22
63
23
55
51
8
16
24
1.71
8699--9179
4
121.2
4
97
1
925
24
0
24
49
1.52
9323--9348
3
8.7
3
100
0
52
34
0
0
65
0.93
10016--10117
53
1.9
53
85
0
141
28
11
11
48
1.75
12740--12871
69
1.9
69
84
4
176
27
18
12
42
1.85
13053--13177
66
1.9
66
86
3
180
24
19
16
40
1.91
13755--13963
105
2.0
105
100
0
418
35
21
18
24
1.95
17528--17556
12
2.5
12
94
5
51
79
3
0
17
0.87
21070--21113
22
2.0
22
86
8
63
38
6
0
54
1.27
21075--21123
21
2.3
20
80
10
53
40
4
0
55
1.19
22339--22386
2
24.0
2
89
8
71
2
45
0
52
1.12
25708--25752
2
22.5
2
100
0
90
48
0
0
51
1.00
27721--27767
23
2.0
23
91
0
76
34
27
19
19
1.96
27729--27812
23
3.7
23
80
6
98
29
26
22
21
1.99
28720--28762
21
2.0
21
91
8
70
32
18
25
23
1.97
32622--32671
2
25.0
2
91
0
82
50
4
0
46
1.20
32987--33093
23
4.7
23
86
0
133
28
25
25
20
1.99
34008--34050
21
2.0
21
91
8
70
32
18
25
23
1.97
35842--35902
18
3.4
18
93
0
95
62
0
31
6
1.21
41601--41671
20
3.7
20
68
24
62
36
9
5
47
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46406--46790
197
2.0
194
93
1
662
39
10
5
44
1.62
52198--52236
17
2.3
17
86
8
53
61
0
2
35
1.10
53009--53183
81
2.2
81
98
0
341
39
17
13
29
1.88
60380--60409
4
7.5
4
92
0
51
46
23
3
26
1.68
60380--60422
8
5.4
8
91
0
59
41
23
9
25
1.84
60380--60422
12
3.6
12
87
0
59
41
23
9
25
1.84
68208--68248
20
2.0
20
100
0
82
4
36
4
53
1.44
70802--70875
34
2.2
34
92
0
121
22
25
16
35
1.95
79179--79223
21
2.1
21
91
0
72
24
8
46
20
1.78
79485--79551
27
2.5
27
80
0
80
19
5
41
32
1.76
81442--81542
47
2.1
47
82
7
125
49
17
9
22
1.76
86491--86526
19
1.9
19
88
5
56
58
5
0
36
1.22
86652--86710
31
2.0
29
86
6
82
52
0
0
47
1.00
87806--87878
31
2.4
31
83
4
85
50
9
9
30
1.67

Tables:   1

The End!