genome.fa.s6508.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006508.1 Hibiscus syriacus cultivar Beakdansim tig00015839_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53208

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2031--2080	24	2.1	24	85	7	66	46	0	2	52	1.12
2601--2654	17	3.1	17	82	12	56	42	5	1	50	1.36
3219--3320	40	2.6	40	83	7	120	29	16	14	39	1.89
5112--5205	49	2.0	47	91	4	152	24	13	23	38	1.91
6293--6332	21	1.9	21	100	0	80	25	15	5	55	1.60
7633--7712	40	2.0	40	95	0	142	46	16	21	16	1.84
9347--9388	18	2.4	18	76	4	50	54	4	16	23	1.61
9688--9806	57	2.1	56	84	10	154	28	19	22	29	1.98
12529--12610	23	3.6	22	77	8	85	24	23	28	24	2.00
12529--12591	21	2.9	22	80	4	74	23	23	25	26	2.00
12533--12629	44	2.2	44	85	10	128	26	20	25	26	1.99
18476--18539	20	3.2	20	100	0	128	25	20	29	25	1.99
21938--21979	3	14.0	3	89	0	66	35	2	0	61	1.09
23397--23429	13	2.8	12	90	9	50	30	0	0	69	0.88
23516--23937	5	85.2	5	88	11	640	39	0	0	60	0.97
23518--23986	35	12.7	38	82	16	323	39	0	0	59	1.06
26795--26833	19	2.1	19	100	0	78	38	15	0	46	1.46
30416--30459	20	2.2	20	87	0	61	27	11	11	50	1.72
35046--35110	22	3.2	19	76	18	51	27	13	33	24	1.93
35066--35110	22	2.0	23	91	4	74	31	13	28	26	1.94
35088--35126	14	2.8	14	76	0	51	28	20	25	25	1.99
35510--35548	2	19.5	2	100	0	78	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35581--35872	55	5.3	55	87	0	386	31	18	18	31	1.95
35583--35872	110	2.6	110	88	0	427	31	18	18	31	1.95
35581--35917	110	3.1	110	85	1	426	31	18	18	30	1.96
42157--42201	22	2.0	23	86	4	65	28	13	31	26	1.94
42155--42207	22	2.5	20	80	11	61	28	13	32	26	1.93
42616--42882	55	4.9	55	90	2	376	28	18	20	31	1.96
47835--47885	16	3.2	17	71	23	56	45	0	19	35	1.51
50449--50483	2	17.5	2	100	0	70	51	0	0	48	1.00
50804--50832	2	15.0	2	92	7	51	48	0	0	51	1.00
50862--51183	34	9.1	35	75	15	217	45	3	6	44	1.48
51211--51252	13	3.2	13	83	10	50	23	2	0	73	0.94
52347--52392	24	1.9	24	90	0	74	13	10	4	71	1.27
52387--52464	4	20.5	4	71	21	53	24	2	0	73	0.96
52445--52494	14	3.7	14	80	15	52	12	6	2	80	0.98
52414--52500	29	2.9	29	80	14	88	19	4	1	74	1.05

Tables:   1

The End!