genome.fa.s651.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000651.1 Hibiscus syriacus cultivar Beakdansim tig00001258_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87552

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6178--6296	53	2.2	54	88	4	170	23	19	26	30	1.98
6291--6340	22	2.3	22	96	0	91	24	24	30	22	1.99
8905--9005	21	4.8	19	81	13	94	29	16	30	22	1.96
8929--9006	21	3.7	21	86	13	108	28	16	32	23	1.96
10576--10612	19	1.9	19	100	0	74	32	21	24	21	1.98
15300--15412	54	2.1	54	88	3	165	23	20	25	30	1.99
16036--16060	2	12.5	2	100	0	50	52	0	0	48	1.00
18063--18123	21	3.0	21	88	11	99	27	16	32	22	1.96
23467--23630	73	2.2	75	84	4	215	25	20	25	29	1.99
32157--32196	19	2.0	21	85	9	57	30	5	0	65	1.14
36178--36255	39	2.0	39	82	5	95	29	28	25	16	1.97
36332--36388	21	2.8	21	76	10	55	63	3	17	15	1.45
42941--42966	1	26.0	1	100	0	52	100	0	0	0	0.00
43539--43564	1	26.0	1	100	0	52	100	0	0	0	0.00
43748--44417	105	6.4	105	93	1	1080	32	26	18	21	1.97
50610--50740	59	2.2	59	82	6	149	43	5	17	33	1.72
61680--61721	21	2.0	22	90	4	68	16	21	14	47	1.82
64134--64241	36	3.0	36	82	6	121	32	20	13	33	1.92
64339--64467	65	2.0	65	89	3	197	31	17	12	39	1.86
64424--64507	21	4.3	21	75	17	99	27	25	10	36	1.89
64411--64486	36	2.1	36	90	4	118	26	21	13	39	1.89
64424--64546	57	2.1	60	89	4	189	27	23	12	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64479--64597	36	3.2	36	84	6	175	25	24	14	36	1.93
64536--64651	54	2.2	51	89	4	169	23	24	16	36	1.94
64435--64684	90	2.7	90	91	3	383	24	23	14	37	1.92
64587--65178	39	15.9	36	85	5	630	27	21	14	36	1.93
64704--64761	15	3.5	15	70	20	53	22	25	15	36	1.94
64754--64890	21	7.4	21	66	29	87	27	25	11	35	1.91
70919--70955	2	18.5	2	100	0	74	51	0	0	48	1.00
73728--73853	62	2.0	62	93	0	216	29	7	17	45	1.77
75634--75771	36	3.9	36	84	2	163	33	21	23	21	1.97
80437--80562	44	2.9	44	92	0	198	37	20	11	30	1.88
83632--83719	45	2.0	45	93	0	149	27	26	18	28	1.98

Tables:   1

The End!