genome.fa.s6510.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006510.1 Hibiscus syriacus cultivar Beakdansim tig00015854_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80323

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
904--938	3	11.7	3	88	11	54	65	0	0	34	0.93
901--942	13	3.5	13	87	12	63	64	0	0	35	0.94
1571--1606	16	2.2	17	95	5	65	38	25	13	22	1.91
3302--3374	30	2.5	30	81	2	85	61	5	13	19	1.51
6247--6284	20	1.9	20	88	0	58	55	7	7	28	1.57
18603--18645	2	21.5	2	100	0	86	51	0	0	48	1.00
18693--18837	75	1.9	75	83	8	188	25	16	13	44	1.84
19251--19294	23	1.9	23	81	9	54	54	2	15	27	1.53
21831--22404	112	5.1	112	91	0	875	45	13	13	26	1.81
21831--22404	223	2.6	224	92	0	918	45	13	13	26	1.81
22275--22722	182	2.5	182	90	0	700	43	12	15	28	1.84
23368--23414	23	2.0	23	91	0	76	38	19	8	34	1.82
24123--24153	15	2.1	15	93	0	53	70	0	0	29	0.87
37381--37476	42	2.3	42	83	10	124	54	0	0	45	0.99
37735--37782	25	1.9	25	86	0	69	27	18	20	33	1.96
44176--44275	34	2.8	36	88	10	152	44	13	16	27	1.84
44668--44706	14	2.8	13	88	11	51	23	2	2	71	1.10
44666--44708	18	2.5	17	81	7	52	25	2	2	69	1.12
44706--44748	2	21.5	2	95	0	77	46	0	2	51	1.13
45196--45229	9	3.8	9	92	7	52	20	2	0	76	0.92
45196--45230	13	2.6	14	90	4	54	20	2	0	77	0.90
48265--48326	23	2.7	22	80	9	72	79	6	14	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48265--48334	20	3.3	20	82	9	68	78	5	14	1	1.00
49830--49934	36	2.9	36	91	2	165	24	23	13	38	1.91
49830--49939	37	3.0	37	90	2	168	26	23	12	37	1.91
49848--50239	102	3.9	102	93	0	642	29	20	12	36	1.90
50052--50138	37	2.4	37	86	5	115	25	21	13	39	1.90
50153--50222	36	1.9	36	82	0	86	28	20	12	38	1.89
50254--50304	21	2.4	21	96	0	93	23	29	9	37	1.87
50192--50360	88	1.9	88	87	4	252	31	24	10	33	1.90
51192--52264	105	10.3	104	89	4	1506	33	26	17	22	1.96
51192--52264	205	5.2	205	91	2	1576	33	26	17	22	1.96
51192--52264	310	3.4	311	88	5	1542	33	26	17	22	1.96
53270--53308	14	2.8	13	88	11	51	23	2	2	71	1.10
53268--53310	18	2.5	17	81	7	52	25	2	2	69	1.12
53782--53815	9	3.8	9	92	7	52	20	2	0	76	0.92
53782--53816	13	2.6	14	90	4	54	20	2	0	77	0.90
56853--56938	37	2.3	36	80	8	91	53	2	1	43	1.21
57354--57480	68	1.9	65	90	4	200	44	16	11	27	1.83
57354--57495	68	2.1	66	87	5	196	46	16	10	26	1.80
58730--58788	26	2.2	24	78	18	64	30	1	3	64	1.20
68014--68051	20	1.9	19	89	5	58	36	0	0	63	0.95
69806--69846	21	1.9	22	90	5	66	39	17	19	24	1.92
71962--72046	26	3.3	26	91	0	134	3	37	12	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75720--75761	2	21.0	2	100	0	84	50	0	0	50	1.00
78778--78811	15	2.3	15	94	0	59	35	0	0	64	0.94
78957--79013	20	3.0	20	89	5	82	22	24	7	45	1.77

Tables:   1

The End!