genome.fa.s6512.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006512.1 Hibiscus syriacus cultivar Beakdansim tig00015866_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67117

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3893--4172	88	3.2	87	83	5	323	32	16	13	38	1.87
4239--4377	60	2.3	61	83	3	174	35	19	4	40	1.71
4281--4376	31	3.2	30	70	16	81	35	20	5	38	1.75
4537--4675	59	2.3	61	82	9	169	39	5	24	30	1.77
4576--4710	60	2.3	59	82	1	162	40	3	24	31	1.73
4767--4896	50	2.6	49	74	7	125	46	10	6	36	1.64
5554--5593	2	20.0	2	94	0	71	52	0	0	47	1.00
10791--10885	50	1.9	50	84	0	127	23	33	26	16	1.96
11087--11126	21	1.9	21	84	0	53	27	0	2	70	1.01
12328--12365	2	19.0	2	100	0	76	50	0	0	50	1.00
14673--14785	60	1.9	60	87	3	165	35	15	16	32	1.90
14673--14799	60	2.1	60	84	5	159	35	16	15	32	1.91
14673--14819	60	2.4	59	78	11	147	34	16	16	33	1.91
17987--18022	2	18.0	2	94	0	63	50	2	47	0	1.15
19894--19981	44	2.0	44	100	0	176	43	4	27	25	1.74
24578--24638	18	3.4	18	74	17	63	18	26	26	29	1.98
24562--24659	36	2.7	36	88	0	142	21	25	22	30	1.99
24403--24780	207	1.8	207	82	1	488	24	29	18	27	1.98
25664--26508	423	2.0	423	99	0	1663	37	19	13	29	1.91
28950--29001	27	1.9	27	100	0	104	42	7	17	32	1.77
35194--35240	21	2.2	20	82	10	58	19	6	2	72	1.17
35213--35269	29	1.9	30	85	3	80	17	5	5	71	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35751--35792	22	1.9	22	85	0	57	30	26	9	33	1.88
44223--44353	57	2.3	57	94	0	226	30	23	22	23	1.99
48043--48090	23	2.1	23	96	0	87	33	4	37	25	1.75
52189--52234	21	2.2	21	84	7	58	36	2	8	52	1.45
55727--55763	19	2.0	19	89	5	58	67	0	8	24	1.17
55856--56136	39	7.8	36	78	12	242	43	7	4	44	1.55
55856--56123	69	3.7	75	80	10	251	42	7	4	44	1.54
56105--56196	32	3.1	27	70	17	67	51	7	3	38	1.47
56256--56318	2	32.0	2	89	9	94	50	0	3	46	1.17
60790--60839	24	2.0	24	88	7	73	44	10	34	12	1.75

Tables:   1

The End!