genome.fa.s6514.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006514.1 Hibiscus syriacus cultivar Beakdansim tig00015868_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64089

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663--705	22	2.0	22	86	4	61	13	27	44	13	1.83
4078--4133	19	3.0	19	75	10	53	41	1	21	35	1.64
4513--4561	21	2.3	21	89	0	71	24	16	30	28	1.96
4550--4604	22	2.5	22	96	0	101	23	23	20	32	1.98
13525--13667	60	2.4	60	83	3	173	32	23	2	41	1.69
14577--14616	2	20.0	2	100	0	80	50	0	0	50	1.00
22956--23003	21	2.3	21	96	0	87	41	12	18	27	1.86
27606--27653	21	2.3	21	96	0	87	41	12	18	27	1.86
31049--31086	19	2.0	19	100	0	76	36	26	5	31	1.79
36980--37021	16	2.6	16	78	14	50	35	2	0	61	1.09
41183--41236	22	2.5	22	78	0	63	38	22	9	29	1.85
48063--48141	30	2.6	31	85	2	99	20	27	21	30	1.98
49415--49467	26	2.0	26	82	7	63	32	16	22	28	1.96
50422--50490	12	5.8	12	73	10	61	17	15	18	47	1.82
50385--50492	24	4.5	24	74	13	98	19	16	17	46	1.85
51804--51858	24	2.3	24	96	0	101	54	14	9	21	1.68
51856--51943	46	1.9	46	90	0	140	56	11	4	27	1.53
51862--51941	23	3.5	23	65	13	56	56	11	3	28	1.52
52401--52530	55	2.4	55	84	5	165	31	18	14	35	1.91
53690--53734	21	2.1	22	87	4	65	35	31	20	13	1.91
55962--56008	24	1.9	25	82	4	60	61	4	6	27	1.39
57769--57799	15	2.1	15	93	0	53	25	22	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61211--61249	20	2.0	20	89	0	60	46	5	7	41	1.55
62042--62084	23	2.0	23	86	9	63	37	23	23	16	1.94

Tables:   1

The End!