genome.fa.s6515.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006515.1 Hibiscus syriacus cultivar Beakdansim tig00015870_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112678

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4604--4642	20	2.0	20	89	0	60	25	28	35	10	1.89
5107--5321	102	2.1	101	95	2	387	23	12	25	39	1.89
5337--5400	23	2.8	22	76	9	74	21	25	25	28	1.99
7607--7701	30	3.2	30	100	0	190	26	9	16	47	1.77
11976--12032	28	2.0	28	87	12	82	26	0	22	50	1.49
11982--12040	28	2.1	28	84	12	77	23	0	23	52	1.47
12456--12494	2	19.5	2	100	0	78	48	0	0	51	1.00
23102--23126	5	5.0	5	100	0	50	20	0	0	80	0.72
32974--33082	19	5.4	19	75	13	83	34	5	26	33	1.80
33577--33650	20	3.7	20	75	10	78	24	18	24	32	1.97
33555--33670	41	2.9	41	87	3	155	24	17	21	37	1.94
33666--33712	21	2.2	21	80	0	58	36	19	19	25	1.95
37949--38067	53	2.2	53	80	5	123	61	5	5	27	1.40
38907--38938	15	2.2	15	94	5	57	0	12	12	75	1.06
39356--39454	3	33.0	3	86	8	139	62	0	0	37	0.95
39578--40217	76	8.5	76	97	1	1198	35	22	20	21	1.96
40886--40937	22	2.4	22	96	0	95	38	15	9	36	1.80
43288--43627	114	3.0	114	92	0	547	31	20	14	33	1.93
51021--51139	53	2.2	53	80	5	123	61	5	5	27	1.40
51978--52009	15	2.2	15	94	5	57	0	12	12	75	1.06
52427--52528	3	33.0	3	86	5	141	61	0	0	37	1.03
54683--54775	46	2.0	46	100	0	186	43	21	18	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55175--55218	22	2.0	22	100	0	88	31	9	22	36	1.86
66289--66352	33	1.9	34	87	3	94	43	1	1	53	1.19
66324--66398	37	2.0	37	85	10	100	49	2	0	48	1.15
69937--69988	21	2.7	20	82	8	54	40	5	1	51	1.37
76640--76668	14	2.1	14	100	0	58	20	0	0	79	0.74
76822--76945	65	1.9	66	81	8	155	16	8	4	70	1.28
81660--82598	84	11.4	84	78	6	860	30	24	20	24	1.98
81660--82584	250	3.7	248	83	4	1021	30	24	19	24	1.98
81660--82684	164	6.2	164	81	5	1089	31	24	20	24	1.98
84287--84314	4	7.0	4	100	0	56	25	0	0	75	0.81
84312--84344	2	16.5	2	93	0	57	45	0	3	51	1.16
86487--86585	34	2.9	34	84	0	108	44	15	24	16	1.85
87874--87917	13	3.5	13	78	6	54	79	13	4	2	0.98
87965--87992	8	3.5	8	100	0	56	89	0	10	0	0.49
89533--89558	13	2.0	13	100	0	52	46	7	7	38	1.61
94968--95049	15	5.5	15	88	2	121	37	7	19	35	1.80
94968--95049	30	2.8	30	94	1	139	37	7	19	35	1.80
94963--95049	45	2.0	44	93	2	147	40	6	19	33	1.78
95032--95101	20	3.5	20	96	0	131	40	10	14	35	1.79
95268--95333	28	2.3	27	82	12	78	51	1	1	45	1.19
95327--95420	29	3.4	29	72	16	94	48	1	1	48	1.15
95386--95429	22	2.0	23	86	4	63	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95390--95446	21	2.6	22	81	10	64	52	0	0	47	1.00
95620--95671	19	2.7	19	96	0	95	44	17	17	21	1.87
98878--98905	2	14.0	2	100	0	56	50	0	50	0	1.00
99455--99917	195	2.4	194	94	1	795	36	11	14	38	1.81
101266--101312	19	2.5	19	96	0	85	51	2	6	40	1.39
103578--103874	30	9.9	30	95	0	540	25	16	27	30	1.96
104923--104992	32	2.2	32	78	0	77	28	14	27	30	1.95
105353--105395	2	21.5	2	100	0	86	48	0	0	51	1.00
108768--108858	20	4.6	20	77	9	87	32	25	19	21	1.97
108768--108878	20	5.5	20	76	11	75	34	24	18	22	1.96
109046--109089	22	2.0	22	90	0	70	22	45	13	18	1.84
109350--109408	20	3.0	20	87	0	73	16	18	22	42	1.89
110720--110764	18	2.5	18	88	0	72	26	44	15	13	1.83
111307--111349	20	2.2	20	86	0	59	34	25	23	16	1.95
111375--111474	19	5.8	18	72	21	81	50	22	17	11	1.77
111356--111469	33	3.5	33	95	1	194	50	21	16	10	1.75
111362--111452	14	5.9	14	71	23	67	50	24	15	9	1.74
111486--111543	14	3.9	13	74	25	53	8	17	24	50	1.74
111499--111616	20	6.4	19	73	14	79	13	19	23	43	1.87
111481--111559	33	2.4	32	95	2	140	10	18	22	48	1.78
111546--111597	18	2.7	19	79	11	61	15	23	23	38	1.92
111556--111591	18	2.0	18	94	0	63	16	25	22	36	1.94

Tables:   1

The End!