Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006516.1 Hibiscus syriacus cultivar Beakdansim tig00015871_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73446

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3607--3713
44
2.4
44
89
6
171
32
14
14
37
1.88
4072--4282
105
2.0
105
87
4
304
35
9
18
36
1.84
4127--4447
159
2.0
159
83
6
409
38
10
18
32
1.85
4289--4619
100
3.3
100
78
8
382
43
11
15
30
1.81
6008--6037
14
2.1
14
93
0
51
30
36
3
30
1.74
9266--9311
21
2.2
20
82
14
58
65
2
10
21
1.35
9447--9787
175
1.9
175
98
0
664
38
15
18
27
1.91
14390--14421
15
2.1
15
100
0
64
25
37
0
37
1.56
16709--16748
21
1.9
21
89
0
62
10
25
40
25
1.86
16731--16791
20
2.9
21
85
7
70
16
26
32
24
1.96
18573--18608
15
2.4
15
90
0
54
44
0
5
50
1.25
22845--22880
15
2.4
15
90
0
54
44
0
5
50
1.25
29189--29510
160
2.0
160
97
1
612
47
6
2
43
1.40
29561--29798
18
13.7
18
69
18
80
44
6
2
45
1.45
29673--29759
29
3.2
28
78
14
76
45
3
2
48
1.32
29711--29759
2
24.0
2
84
12
64
46
2
2
48
1.25
34205--34671
223
2.1
215
89
6
719
23
12
27
37
1.90
34692--34779
38
2.3
38
88
9
128
14
11
35
38
1.82
38123--38162
2
20.0
2
100
0
80
50
0
0
50
1.00
38922--39220
107
2.9
105
84
4
378
21
19
25
33
1.97
40399--40428
11
2.7
11
94
0
51
0
20
0
80
0.72
40332--40475
71
2.0
71
79
2
155
12
24
11
52
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41285--41320
16
2.2
16
100
0
72
16
33
25
25
1.96
50808--50864
18
3.2
18
80
11
64
77
10
7
5
1.12
50820--50870
23
2.1
24
82
13
61
78
7
9
3
1.07
51204--51239
16
2.2
16
90
0
54
75
2
2
19
1.06
59395--59523
37
3.5
36
73
14
104
28
13
10
46
1.77
59913--60452
119
4.6
118
82
1
616
38
15
20
25
1.92
61566--61608
22
2.0
22
86
4
61
13
27
44
13
1.83
65454--65502
21
2.3
21
89
0
71
24
16
30
28
1.96
65491--65545
22
2.5
22
96
0
101
23
23
20
32
1.98

Tables:   1

The End!