genome.fa.s6518.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006518.1 Hibiscus syriacus cultivar Beakdansim tig00015873_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61787

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1269--1354	25	3.4	25	91	1	136	51	13	5	29	1.65
1318--1433	40	2.9	40	92	5	191	47	13	9	29	1.75
4152--4186	2	17.5	2	100	0	70	51	0	0	48	1.00
17071--17124	22	2.6	21	73	5	56	35	14	29	20	1.93
17421--17992	54	10.6	54	89	0	851	30	16	18	35	1.93
20328--20380	26	2.1	26	85	3	72	52	1	0	45	1.11
21039--21091	17	3.1	17	100	0	106	30	0	22	47	1.52
24229--24282	22	2.4	23	78	12	67	57	3	14	24	1.54
26034--26068	14	2.5	14	90	0	52	34	14	20	31	1.92
26227--26266	20	2.0	20	90	9	64	40	0	0	60	0.97
26360--26410	23	2.2	23	82	0	57	45	1	1	50	1.24
26529--26580	23	2.2	24	83	10	72	46	0	3	50	1.20
26539--26592	23	2.3	23	96	0	99	42	0	3	53	1.18
26582--26628	22	2.1	23	88	4	69	53	0	0	46	1.00
26590--26644	22	2.5	23	82	8	62	50	0	0	49	1.00
26542--26697	53	2.9	53	77	16	144	48	0	2	49	1.15
27882--27959	22	3.5	22	98	0	147	15	24	42	17	1.88
42503--42555	26	2.0	26	82	13	65	28	24	15	32	1.95
46176--46331	60	2.6	60	80	5	154	39	22	18	19	1.92
47280--47310	8	3.9	8	100	0	62	38	0	9	51	1.35
47414--47479	26	2.5	26	83	9	73	22	9	22	45	1.80
48690--48720	16	1.9	16	93	0	53	61	22	9	6	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48790--48850	16	3.8	16	84	0	86	57	21	13	8	1.62
51045--51166	31	3.7	33	89	5	135	53	14	11	20	1.72
51066--51166	31	3.3	31	92	0	166	54	14	11	18	1.70
53676--53751	35	2.2	35	92	0	125	39	23	1	35	1.63
54147--54391	130	1.9	130	94	0	436	36	14	12	35	1.85
54158--54422	130	2.0	129	83	4	327	40	13	12	33	1.82
54714--54776	28	2.3	27	78	8	63	46	1	3	49	1.27
54856--54889	16	2.0	18	88	11	54	64	5	2	26	1.30
54919--54953	16	2.2	16	89	0	52	51	8	0	40	1.33
59867--59925	27	2.2	27	90	6	93	32	27	11	28	1.92
60614--60673	28	2.1	28	100	0	120	26	15	13	45	1.83

Tables:   1

The End!