genome.fa.s6519.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006519.1 Hibiscus syriacus cultivar Beakdansim tig00015884_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87583

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4376--4422	14	3.4	14	85	5	60	46	27	4	21	1.69
4369--4459	34	2.7	34	81	3	94	48	28	2	20	1.62
4401--4459	20	2.9	21	82	14	86	47	32	0	20	1.50
4528--4564	13	2.6	14	87	12	58	43	0	5	51	1.24
5956--6096	61	2.4	61	85	3	180	30	17	17	34	1.93
9876--9983	51	2.1	51	89	0	162	48	5	2	43	1.41
10900--10946	20	2.4	19	89	10	76	55	10	17	17	1.69
10710--11034	162	2.0	161	87	3	465	41	14	17	26	1.87
11080--11126	20	2.4	19	82	10	67	53	10	17	19	1.72
11089--11131	20	2.3	19	88	11	63	51	11	16	20	1.75
13329--13393	21	3.1	21	93	0	103	41	10	30	16	1.83
14658--14682	4	6.2	4	100	0	50	24	0	28	48	1.52
15257--15305	19	2.6	19	96	0	89	32	2	10	55	1.45
15415--16747	200	6.8	200	85	7	1869	35	14	18	31	1.91
15415--16747	378	3.4	400	90	6	2172	35	14	18	31	1.91
16237--16747	194	2.6	198	91	4	813	35	15	17	31	1.91
18719--18783	23	2.8	23	90	0	103	35	4	20	40	1.73
18711--18788	23	3.5	22	85	3	95	35	3	20	39	1.71
19087--19131	22	2.0	22	83	8	56	40	13	8	37	1.76
19150--19223	23	3.2	23	90	0	112	35	5	20	39	1.75
18454--19329	440	2.0	433	94	2	1529	42	7	10	39	1.67
19699--19746	23	2.1	23	92	0	78	35	16	10	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21041--21091	22	2.4	22	81	12	61	56	0	1	41	1.10
29967--30000	16	2.1	16	94	0	59	32	26	8	32	1.87
30712--30992	104	2.8	98	79	8	311	27	13	19	39	1.90
33002--33046	20	2.2	20	92	0	72	37	11	24	26	1.89
33382--34477	219	5.0	219	91	1	1729	42	8	12	36	1.73
34713--34774	24	2.6	23	85	7	79	64	3	1	30	1.19
35390--35523	65	2.1	65	85	2	180	29	21	17	30	1.97
35402--35543	65	2.2	66	81	6	164	30	22	18	28	1.97
39219--39293	36	2.1	36	97	0	141	30	29	20	20	1.97
40819--40875	24	2.4	24	100	0	114	36	3	42	17	1.67
41252--41388	65	2.1	65	84	2	177	27	23	18	30	1.98
43205--43858	325	2.0	325	97	0	1245	28	24	17	29	1.97
46404--46452	20	2.5	20	83	9	57	30	14	4	51	1.61
48930--48970	21	2.0	21	90	0	64	34	31	12	21	1.91
59125--59162	3	12.3	3	84	15	51	63	0	0	36	0.95
59159--59215	18	3.2	18	70	9	62	45	3	8	42	1.52
61299--61376	19	3.9	19	87	11	102	17	37	28	16	1.92
61295--61376	20	4.1	20	87	9	112	18	37	28	15	1.91
62654--62701	19	2.5	20	82	3	62	52	6	12	29	1.63
64139--64240	20	5.1	20	89	2	159	18	37	29	14	1.91
66948--66972	2	12.5	2	100	0	50	48	0	0	52	1.00
71675--72279	54	11.2	54	80	2	601	31	20	24	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72434--72475	20	2.2	19	86	4	57	42	0	0	57	0.99
77604--77655	26	2.0	26	100	0	104	23	26	23	26	2.00
81343--81415	31	2.4	31	90	4	112	19	12	26	42	1.86
81358--81424	31	2.2	31	86	2	91	20	17	25	35	1.95
84060--84117	18	3.4	18	76	13	68	22	0	50	27	1.50
84060--84113	21	2.8	19	86	8	65	24	0	50	25	1.50
84070--84164	9	11.2	9	64	20	53	27	0	45	27	1.54
84066--84248	33	5.9	33	82	12	217	28	0	43	27	1.55
84114--84163	24	2.1	24	96	0	91	26	0	44	30	1.55
84070--84248	57	3.0	58	84	12	204	29	0	43	27	1.56
85186--85262	35	2.2	36	97	2	147	46	19	9	24	1.79
85204--85260	18	3.2	18	67	2	53	47	19	8	24	1.77
85538--85654	15	8.1	15	76	9	100	46	12	15	25	1.81
85575--85669	15	6.8	14	73	12	63	47	12	12	27	1.78
85576--85666	42	2.2	42	86	4	121	48	12	13	26	1.77
85538--85654	30	4.0	30	79	7	134	46	12	15	25	1.81

Tables:   1

The End!