genome.fa.s652.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000652.1 Hibiscus syriacus cultivar Beakdansim tig00001261_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60747

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4920--4980	16	3.8	16	91	0	104	57	22	11	8	1.60
8178--8208	16	1.9	16	93	0	53	19	19	19	41	1.90
9138--9176	17	2.4	16	83	8	51	69	0	0	30	0.89
11346--11412	33	2.0	33	94	0	116	37	25	7	29	1.83
20730--20793	31	2.0	32	84	3	85	42	3	12	42	1.58
24140--24345	102	2.0	103	88	5	310	36	14	26	23	1.92
24566--24607	18	2.3	18	84	12	50	7	2	14	76	1.10
24859--25310	156	2.9	153	84	5	556	26	16	20	36	1.94
27639--27708	31	2.3	31	94	0	122	32	5	32	28	1.81
29645--29705	31	2.0	31	93	0	104	22	26	13	37	1.91
32476--32514	18	2.2	18	95	0	69	41	23	10	25	1.86
34603--34656	27	2.0	27	85	7	74	29	9	7	53	1.60
38935--38975	14	2.9	14	92	0	64	34	14	17	34	1.90
40625--40738	35	3.3	35	88	2	167	35	20	26	18	1.95
40841--40881	14	2.9	14	88	0	55	36	12	17	34	1.87
46057--46107	20	2.5	20	79	17	61	35	29	15	19	1.93
46120--46187	21	3.2	21	100	0	136	23	25	14	36	1.93
46097--46193	42	2.3	42	85	3	133	28	23	16	30	1.96
46127--46215	21	4.3	21	88	1	99	29	23	16	30	1.97
46222--46428	20	10.4	20	77	7	156	38	24	16	21	1.93
46237--46394	41	3.9	41	91	0	264	38	23	17	20	1.93
46382--46428	18	2.6	18	100	0	94	40	27	10	21	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47078--47165	20	4.8	20	77	17	100	46	18	20	14	1.84
47169--47329	33	4.8	33	86	3	207	15	22	19	41	1.89
47190--47277	14	5.6	14	69	23	59	14	22	21	40	1.90
47179--47297	17	7.2	17	65	25	76	15	22	19	42	1.88
47180--47329	66	2.3	66	91	3	239	15	23	20	41	1.90
47431--47467	14	2.6	14	86	0	56	48	21	0	29	1.50
48837--48918	42	2.0	42	85	0	110	25	17	34	23	1.96
49276--49598	94	3.4	94	95	1	558	46	18	13	22	1.83
51299--51353	20	2.8	19	89	8	83	38	23	23	14	1.92
51365--51445	33	2.5	33	89	0	117	12	20	19	46	1.82
51422--51485	21	3.1	21	82	6	78	12	20	15	51	1.75
51450--51492	20	2.2	20	86	0	59	13	13	20	51	1.76
51460--51500	20	2.0	20	85	0	55	17	14	12	56	1.68
52057--52270	20	10.6	20	78	6	234	18	19	24	37	1.94
52059--52270	41	5.2	41	91	1	338	18	18	24	37	1.94
52320--52367	21	2.3	21	88	0	69	31	20	25	22	1.98
54233--54272	20	2.0	20	95	0	71	45	12	5	37	1.64
54286--54325	20	2.0	21	85	14	57	45	10	5	40	1.60
54337--54377	20	2.0	21	90	4	66	39	17	7	36	1.77
54229--54378	53	2.9	51	91	4	246	47	12	6	34	1.67
58910--59044	48	2.8	49	86	9	188	48	12	6	32	1.67
59011--59049	18	2.0	21	85	14	57	41	15	7	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59680--59768	42	2.0	45	91	8	148	26	16	23	32	1.96

Tables:   1

The End!