genome.fa.s6520.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006520.1 Hibiscus syriacus cultivar Beakdansim tig00015886_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75376

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2503--2534	15	2.1	16	94	5	57	50	28	6	15	1.68
15682--15740	30	2.0	29	96	3	109	38	6	13	40	1.71
23111--24632	182	8.4	182	93	1	2612	41	13	16	28	1.86
23111--24632	543	2.8	545	94	1	2630	41	13	16	28	1.86
23111--24632	725	2.1	724	95	0	2756	41	13	16	28	1.86
24939--24977	19	2.1	19	95	0	69	20	38	15	25	1.92
24925--25085	65	2.5	65	85	3	209	31	24	15	27	1.96
24877--25105	64	3.5	64	80	6	214	30	24	17	27	1.97
31888--31931	21	2.1	21	86	0	61	9	38	15	36	1.80
32957--32995	19	2.1	19	95	0	69	20	38	15	25	1.92
32895--33103	65	3.2	64	80	8	219	30	25	17	27	1.97
32895--33123	64	3.5	64	81	6	223	29	25	17	27	1.98
33808--34215	179	2.3	182	95	1	732	43	12	17	26	1.85
34351--34412	23	2.7	23	92	0	106	37	17	9	35	1.83
34371--34536	87	1.9	87	94	0	296	33	11	10	43	1.76
34458--34502	23	2.0	23	86	0	63	37	15	8	37	1.79
39114--39145	16	1.9	17	93	6	57	40	0	37	21	1.54
44174--44212	3	13.3	3	84	15	55	35	0	0	64	0.94
44853--44932	29	2.8	28	80	5	88	72	6	17	3	1.20
51276--51345	21	3.3	21	75	15	81	18	17	28	35	1.93
51276--51444	42	4.0	42	86	3	239	21	15	21	40	1.91
51295--51410	21	5.4	21	79	11	119	20	17	20	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52100--52135	10	3.3	11	92	7	56	0	16	55	27	1.42
52097--52131	5	6.6	5	96	3	52	0	20	54	25	1.45
52233--52326	21	4.6	20	75	11	84	25	23	19	31	1.98
52228--52307	41	2.0	41	94	0	142	26	23	18	31	1.98
52293--52346	21	2.6	21	91	5	83	22	20	27	29	1.98
52229--52326	41	2.4	41	86	3	126	26	23	18	31	1.97
52644--52705	22	2.8	22	76	13	56	45	1	1	51	1.20
54674--54719	2	23.0	2	100	0	92	50	0	0	50	1.00
60186--60267	30	2.7	31	88	5	123	42	6	10	40	1.65
63968--64021	27	2.0	27	100	0	108	37	18	18	25	1.94
67770--67796	12	2.2	12	100	0	54	29	7	0	62	1.22
68789--68819	2	15.5	2	100	0	62	0	51	0	48	1.00
70747--70778	6	5.3	6	100	0	64	50	34	15	0	1.45

Tables:   1

The End!